Icy

Icy is an #opensource #BioImageAnalysis software to visualize, annotate and quantify bioimaging data.
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[Icy @Icy_BioImaging]

Dear all,
we and many others from the bioimaging community have moved to Bluesky!
You can now find and follow us @icybioimaging.bsky.social
See you soon!

Happy New Year from the Icy team!!

[Icy @Icy_BioImaging]

💡 BioFlow is an image-based method able to extract velocities, pressure and forces inside living cells observed in fluorescence microscopy 🔬🖥️
https://t.co/0brlNAIKRT

👉 The lateral movement of fan-shaped amoeboid cells is not pressure-driven ‼️

[Estibaliz Gómez de Mariscal, PhD @gomez_mariscal]

Less than 24h for an exciting exercise that says "Load, use and fine-tune models from @bioimageio using #DL4MicEverywhere... and export them back to the #BioImageModelZoo format to reuse them in @ilastik_team @deepImageJ @Icy_BioImaging let's see how optimistic this can be 😎

[BIA Unit @BiaUnit]

Now available on Scientific Reports https://t.co/YlaiUdT65J

[Icy @Icy_BioImaging]

@mjdelves The version 2.5.2 correcting the bug you mentioned is now online. Thank you for your input

[Estibaliz Gómez de Mariscal, PhD @gomez_mariscal]

Can't be happier about the new #JDLL from @carlosg91018370 @jytinevez and JC Olivo-Marín being published already!🥳 Congratulations to all!🍾 Looking forward to seeing the consumer box crowded 🤖and the new requests to keep this library growing 🚀 https://t.co/2wJgJkpFbv

[Nature Methods @naturemethods]

Out last week from the Tinevez and Olivo-Marin labs! JDLL: a library to run deep learning models on Java bioimage informatics platforms. This is sure to streamline deployment of DL models in bioimaging. https://t.co/KCQLTSBpLE

[Jean-Yves Tinevez @jytinevez]

Super proud of this work and it was done with awesome colleagues. Let's now put this tool to good use!

[Arrate Munoz Barrutia @ArrateMunoz]

Thrilled to announce our latest paper, 'JDLL' is now published in @NatureMethods! A perfect start to the New Year 🥳 and a fantastic gift from the Reyes Magos! 🌟 Check it out here: https://t.co/CfB3xLvczX Happy Reading & Happy New Year to all! 📚🎆
@Icy_BioImaging @deepImageJ

[Carlos García @carlosg91018370]

@mjdelves @Icy_BioImaging All the chances!
In addition, the plugin (called DeepIcy) will be intended to be as easy as opening an image and clicking on run.

[Carlos García @carlosg91018370]

https://t.co/oNomhtoa8b

[Carlos García @carlosg91018370]

Coming soon to @Icy_BioImaging ...
Run #stardist on your images without code using the https://t.co/y8Hq4GqnAr models.💥💥
Thanks to #JDLL and #appose, we're bringing the power of Deep Learning and Python to the easy-to-use Java world.
Much more is coming!

[Jean-Yves Tinevez @jytinevez]

@Icy_BioImaging (Taken from the BioEngine website.)

[Jean-Yves Tinevez @jytinevez]

Last days to apply!
(deadline is Wednesday)

[Institut Pasteur, since 1887 @institutpasteur]

📣 The Call for application to the Pasteur-Paris University International Doctoral Program is now open
Deadline 📆 31/10/23
Apply now 👉 https://t.co/bSaAJZgxwj
#PhDProgram #EmergingInfectiousDiseases #AntiMicrobialResistance

[BIA Unit @BiaUnit]

Tracking Intermittent Particles with Self-Learned Visual Features.

R Reme, V Piriou, A Hanson ...

2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 1-5

Using visual features for single-particle tracking in fluorescence imaging.

#Hydra #Byotrack #Python #icy

[BIA Unit @BiaUnit]

Hanson A, Reme R, Telerman N, Yamamoto W, Olivo-Marin JC, Lagache T, & Yuste R.

Automatic monitoring of whole-body neural activity in behaving Hydra. bioRxiv, 2023-09.

An open-source platform to monitor neurons’activity in behaving Hydra.

#Hydra #Byotrack #TraseIn #Python #Icy

[IEEE International Symposium on Biomedical Imaging @IeeeIsbi]

The #ISBI2024 Call for Papers is now open! All submissions must be original and not under concurrent review at any other conference or journal. Submit your papers by November 10. Learn more here: https://t.co/E3dek17C4A

[Estibaliz Gómez de Mariscal, PhD @gomez_mariscal]

halo #javadevelopers!! 🗣️Did you see the last masterpiece 🌟 of @carlosg91018370 and colleagues @Icy_BioImaging @deepImageJ for 𝗗𝗟 𝗲𝗻𝗮𝗯𝗹𝗲𝗱 #𝗯𝗶𝗼𝗶𝗺𝗮𝗴𝗲𝗮𝗻𝗮𝗹𝘆𝘀𝗶𝘀 😎? 👇 Looking forward to new tools and pipelines exploiting it 😍
#JDLL
https://t.co/hk5RZ3BLdm

[Cell Biology & Infection @BCI_Pasteur]

🔜Next @BCI_Pasteur seminar this Tuesday

Aydogan Ozcan @InnovateUCLA from @UCLAengineering

Deep Learning-enabled Computational Microscopy and Diffractive Imaging

Invited by @BiaUnit