BioDecoded

A daily digest of 3 articles about biomedical research and tech industry, with an emphasis on bringing data science and AI to life science and medicine.

[BioDecoded @BioDecoded]

Improving microbial phylogeny with citizen science within a mass-market video game
https://t.co/g8p333NqEZ

#CitizenScience

[BioDecoded @BioDecoded]

Topological benchmarking of algorithms to infer Gene Regulatory Networks from Single-Cell RNA-seq Data
https://t.co/J9Z9e7jy3n

#Bioinformatics

[BioDecoded @BioDecoded]

Prediction of tumor origin in cancers of unknown primary origin with cytology-based deep learning
https://t.co/QayQ2H616R

#Bioinformatics

[BioDecoded @BioDecoded]

scGHOST: identifying single-cell 3D genome subcompartments
https://t.co/tX72bJoB7e

#Bioinformatics

[BioDecoded @BioDecoded]

BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies
https://t.co/rv5GvHMoU9

#Bioinformatics

[BioDecoded @BioDecoded]

PLMSearch: Protein language model powers accurate and fast sequence search for remote homology
https://t.co/sMiF7gZmYL

#Bioinformatics

[BioDecoded @BioDecoded]

Inferring gene regulatory networks from single-cell multiome data using atlas-scale external data
https://t.co/m5C430eEj4

#Bioinformatics

[BioDecoded @BioDecoded]

Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain
https://t.co/yWbGlWdqTE

#Bioinformatics

[BioDecoded @BioDecoded]

Accurately clustering biological sequences in linear time by relatedness sorting
https://t.co/sIteJTIDHR

#Bioinformatics

[BioDecoded @BioDecoded]

Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing
https://t.co/4ZUbgOzmOh

#NLP

[BioDecoded @BioDecoded]

AI-guided pipeline for protein–protein interaction drug discovery identifies a SARS-CoV-2 inhibitor
https://t.co/LxbDSGLOob

#AI

[BioDecoded @BioDecoded]

Leveraging large language models for predictive chemistry
https://t.co/TbdfqwReC5

#LLM

[BioDecoded @BioDecoded]

Unsupervised ensemble-based phenotyping enhances discoverability of genes related to left-ventricular morphology
https://t.co/whUKNUXIUO

#DeepLearning

[BioDecoded @BioDecoded]

A comparison of methods for detecting DNA methylation from long-read sequencing of human genomes
https://t.co/aRvr61SjUQ

#Bioinformatics

[BioDecoded @BioDecoded]

AlphaPept: a modern and open framework for MS-based proteomics
https://t.co/9QVTGsGr8C

#Bioinformatics

[BioDecoded @BioDecoded]

Spike sorting with Kilosort4
https://t.co/8dIz59bWXq

#Bioinformatics

[BioDecoded @BioDecoded]

Genomic language model predicts protein co-regulation and function
https://t.co/DwOq4DqXho

#Bioinformatics

[BioDecoded @BioDecoded]

Deciphering cell types by integrating scATAC-seq data with genome sequences
https://t.co/36qp1Ynggw

#Bioinformatics

[BioDecoded @BioDecoded]

SimuCell3D: three-dimensional simulation of tissue mechanics with cell polarization
https://t.co/bjGZlvqzj7

#Bioinformatics

[BioDecoded @BioDecoded]

PMF-GRN: a variational inference approach to single-cell gene regulatory network inference using probabilistic matrix factorization
https://t.co/dm52HXbDNe

#Bioinformatics