CAMI Challenge

Critical Assessment of Metagenomic Interpretation

[CAMI Challenge @CAMI_challenge]

CAMI III launches with the release of a new pre-challenge benchmark dataset, named CAMI III toy human gut, prior to the opening of the challenges. Full announcement: https://t.co/RwKU4FMNkw

[CAMI Challenge @CAMI_challenge]

Our paper on the new CAMI Benchmarking Portal is out now in Nucleic Acids Research!
https://t.co/RvHiphttk3
https://t.co/RvHiphttk3

[MICROBIOME COSI @microbiome_cosi]

Reminder: The ISCBacademy webinar with Nico Pfeifer is today! Moderated by Alice McHardy.
February 25, 2025, at 9:00 AM EST / 3:00 PM CET
Topic: Modeling microbe evolution due to immune system pressure.
Join via ISCB Nucleus. https://t.co/OPm4DtMklx

[MICROBIOME COSI @microbiome_cosi]

𝐈𝐒𝐂𝐁𝐚𝐜𝐚𝐝𝐞𝐦𝐲 𝐂𝐎𝐒𝐈 𝗪𝗲𝗯𝗶𝗻𝗮𝗿 𝗦𝗲𝗿𝗶𝗲𝘀 𝟮𝟬𝟮𝟱
🗓️ Feb 25, 2025 | 9:00 AM EST / 3:00 PM CET
𝗦𝗽𝗲𝗮𝗸𝗲𝗿: Nico Pfeifer
𝗧𝗼𝗽𝗶𝗰: Modeling microbe evolution due to immune system pressure
Details: https://t.co/G9V4qFsr28
Join live: https://t.co/qIOlfFXANC

[MICROBIOME COSI @microbiome_cosi]

New CAMI benchmarking portal launched! Provide reproducible tool results for immediate assessment on CAMI datasets or other substantial contributions and become part of the CAMI benchmarking portal paper! Read more at https://t.co/Jd51frqjnE

[CAMI Challenge @CAMI_challenge]

Join us for our upcoming ISCBacademy Webinar:

“Longitudinal genome resolved metagenomics” by Christopher Quince

November 30, 2021 at 11:00 AM EST

https://t.co/fWVHetp0da

[CAMI Challenge @CAMI_challenge]

The results of the second 2nd CAMI challenge are available as preprint at bioRxiv https://t.co/aUIz5xBrlP

[CAMI Challenge @CAMI_challenge]

For the rhizosphere challenge we provide gold standards for short read and hybrid short/long read assemblies as well as a Megahit short read assembly.

[CAMI Challenge @CAMI_challenge]

Assemblies for second part of CAMI II rhizosphere challenge (profiling, genome binning and taxon binning) are available now at https://t.co/9zuHtVznkH
This part of the CAMI II challenge will close November 30th, 2020.

[CAMI Challenge @CAMI_challenge]

Due to multiple requests we received from participants we will extend the CAMI 2 plant rhizosphere assembly challenge deadline until September 29th, 2020.

[CAMI Challenge @CAMI_challenge]

Please contact us if you need an extension of the deadline.

[CAMI Challenge @CAMI_challenge]

Deadline for the assembly challenge of the plant rhizosphere dataset is approaching (June, 29th). Submit your short read, long read or hybrid assemblies at https://t.co/9zuHtVznkH

[Rayan Chikhi @RayanChikhi]

@DavidKoslicki @CAMI_challenge @Alexey_Gurevich A proposal for changing (meta) QUAST metrics when evaluating strains

[CAMI Challenge @CAMI_challenge]

For this challenge we are especially interested in strain-aware assemblies. Anybody working on this?

[CAMI Challenge @CAMI_challenge]

The next @CAMI_challenge is online! This time we provide a plant rhizosphere dataset. Check out https://t.co/9zuHtVznkH for more infos and how to download datasets.

[CAMI Challenge @CAMI_challenge]

Now on: Piotr Dabrowski discussing the Pathogen Challenge

[CAMI Challenge @CAMI_challenge]

Fernando Meyer now presenting binning results

[CAMI Challenge @CAMI_challenge]

@DavidKoslicki discussing profiling metrics with @gail_l_rosen (remotely) on the CAMI evaluation workshop

[CAMI Challenge @CAMI_challenge]

@DavidKoslicki @luizirber There is a chat, open the side panel

[CAMI Challenge @CAMI_challenge]

@luizirber @DavidKoslicki There is a chat feature. Open the side panel, there you see the participants. And on top you can change to the chat

[David Koslicki @DavidKoslicki]

CAMI2 evaluation meeting happening now! https://t.co/9fUdIXb1Jn
Remote participation is possible (DM @CAMI_challenge for connection information)!