Muhamad Fachrul, PhD

Bioinformatician (Metagenomics) at MDU-PHL. RNA-seq and Microbiome. Jakartan🇮🇩 in Melbourne🇦🇺

[bioRxiv Genomics @biorxiv_genomic]

Ancestral and environmental diversity shape the immune landscape in Indonesia https://t.co/yjiMY7bgIO #biorxiv_genomic

[Muhamad Fachrul, PhD @F_Azr]

Had a fantastic time in Carlsbad for CZI's Single-Cell Biology Annual Meeting, jam-packed with stellar science and wonderful people. As an ECR, it was especially great to connect with experts in the field and meet fellow Next-Gen Researcher awardees. Thank you @cziscience!!

[Melanie Neeland @melanie_neeland]

Aussie squad at #CZI2023 🥹@JovMaksimovic @shazanfar @F_Azr @mritchieau @drneavin @fabiousername

[Muhamad Fachrul, PhD @F_Azr]

My thesis submission felt like a rather underwhelming end to my PhD, so it was nice to officially celebrate being #PhDone last week! #UnimelbAlumni

[Muhamad Fachrul, PhD @F_Azr]

@minouye271 Naww thanks Mike, wish you were in Melb for it!! 🙏🙏

[Muhamad Fachrul, PhD @F_Azr]

Thread of the preprint below:
We've also performed validation on the Geuvadis dataset in the published version of the paper, demonstrating RGStraP's utility in capturing genetic structure across populations

https://t.co/zX9oRR7SF8

[Muhamad Fachrul, PhD @F_Azr]

My 2nd preprint is up!

We demonstrated a straightforward technique of capturing 🧬 structure solely from RNAseq data, which can then be used to control for population stratification in downstream analyses

@minouye271
https://t.co/poHS2pnKjD

Small thread below! #RGStraP (1/9)

[Muhamad Fachrul, PhD @F_Azr]

Been a while since I updated here. Highlights:
- Finished my PhD and got my degree March this year (@minouye271 @asalim_hint 🙏)
- Joined @ee_reh_neh's lab as a postdoc (soon moving to @SVIResearch)
- My 2nd manuscript is out now! https://t.co/yIL1uTnZzH
https://t.co/v3BAZmolnU

[Loïc Lannelongue @Loic_Lnlg]

🎉 New paper! 🎉
How to estimate the carbon footprint of computations, in practice? With @minouye271, we discuss the different options in this Comment just out in @MethodsPrimers

Full text: https://t.co/SzEfsT6z6O
And a lot of resources on https://t.co/HObEYM4fmi 🌱

[Muhamad Fachrul, PhD @F_Azr]

Hope everyone had a good break. Just realized that the first paper from my PhD is finally published! 😅🎉

https://t.co/fq3mKwTiHM

Huge thanks to my supervisors and co-authors for the guidance and push 🙏
@phylogeo @SJPamp @minouye271 @asalim_hint

[Muhamad Fachrul, PhD @F_Azr]

We'd like to acknowledge support from @CamBakerSGI, @UniMelbMDHS, @BakerResearchAu, and STRATAA study group for making this research possible!

(9/9)

[Muhamad Fachrul, PhD @F_Azr]

My 2nd preprint is up!

We demonstrated a straightforward technique of capturing 🧬 structure solely from RNAseq data, which can then be used to control for population stratification in downstream analyses

@minouye271
https://t.co/poHS2pnKjD

Small thread below! #RGStraP (1/9)

[Muhamad Fachrul, PhD @F_Azr]

In conclusion, our paper (https://t.co/poHS2pnKjD) demonstrates population structure can be directly inferred and controlled using RNAseq data, facilitating improved retrospective and future analyses of transcriptomic data.

(8/9)

[Muhamad Fachrul, PhD @F_Azr]

@lekwen90 @American_Heart @Joseph_C_Wu @StanfordCVI Huge congratulations, Wilson!