Gibson Lab

Gibson Lab @harvardmed & @brighamresearch | ML and control for biology | PI: @travisegibson

[Gibson Lab @GibsonLab]

"Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain" - Kim et al.

https://t.co/UXuuXKEodB

[Travis E Gibson @TravisEGibson]

See you @iclr_conf , poster session 2, April 23rd in the afternoon

"On the stability of gradient descent with second order dynamics for time-varying cost functions"

[Gibson Lab @GibsonLab]

"Learning ecosystem-scale dynamics from microbiome data with MDSINE2"

We have also included two of the densest longitudinal microbiome studies to date with "humanized" mice (healthy and UC human donor). 76 sample per mouse over 65 days. 16S and qPCR

https://t.co/g4Vbr59odP

[Nature Microbiology @NatureMicrobiol]

Out Now! Learning ecosystem-scale dynamics from microbiome data with MDSINE2 https://t.co/VrflBV6Pwn #Microbiome #BayesianStatistics #EcosystemDynamics

[Travis E Gibson @TravisEGibson]

A nice blog post by MGB on our work https://t.co/YVD6gOKmCT can be found here https://t.co/lLM0fcocbu

[Gibson Lab @GibsonLab]

@naarkhoo it is now open access https://t.co/QiKHm2AYF0

[Gibson Lab @GibsonLab]

"Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain" - Kim et al.

https://t.co/UXuuXKEodB

[Gibson Lab @GibsonLab]

@naarkhoo We have payed for open access now so it should be updated soon on the website will let you know

[Gibson Lab @GibsonLab]

Our paper on strain tracking is now open access.

https://t.co/QiKHm2AYF0

[Gibson Lab @GibsonLab]

https://t.co/QiKHm2AYF0

[Gibson Lab @GibsonLab]

Several Postdoc Fellow openings. All fellows have triple appointment at HMS,BWH, and Broad

- Biological sequence models
- Learning single cell dynamics
- Bacteriotherapy design, “bugs-as-drugs”

more details: https://t.co/LexTm9nqsT

[Gibson Lab @GibsonLab]

If you like our work and want to join please reach out!

[Gibson Lab @GibsonLab]

Two abstracts #cshlmbiome @cshlmeetings

Dynamical systems inference for learning the rules of microbial colonization
-@dannnmacdonald
Oral: Thursday 9AM

Direct, noninvasive single molecule measurements reveal the gut microbiome to be a shock absorber
-Utkarsh Sharma
Poster #195

[Gibson Lab @GibsonLab]

Two abstracts #cshlmbiome @cshlmeetings

Dynamical systems inference for learning the rules of microbial colonization
-@dannnmacdonald
Oral: Thursday 9AM

Direct, noninvasive single molecule measurements reveal the gut microbiome to be a shock absorber
-Utkarsh Sharma
Poster #195

[Gibson Lab @GibsonLab]

Updated our pre-print: Strain tracking with uncertainty quantification

Better benchmarking- strains are mutated before including them in the database, comparator method added, real dataset added that has WGS isolates, and model improvements.

Take a look
https://t.co/kaJbVq4KYS

[Gibson Lab @GibsonLab]

New Pre-print📄

"On the stability of second order gradient descent for time varying convex functions"

https://t.co/NKqIaSSd4A

[Gibson Lab @GibsonLab]

New opening in the lab for postdoc interested in
"Designing microbial communities using control theory principles"
https://t.co/E9TGyz1Am8

[Gibson Lab @GibsonLab]

Congrats to @dannnmacdonald on his @NSERC_CRSNG Banting Postdoctoral Fellowship! https://t.co/JV4usUnGRK

[Gibson Lab @GibsonLab]

@JShendure @Nature is this the densest time-series single cell RNA seq dataset to ever be published

[Gibson Lab @GibsonLab]

Official Job Posting
https://t.co/vBc8tY2oXK

[Gibson Lab @GibsonLab]

We are hiring a wet-lab research associate to work on multiplexed error-robust fluorescence in situ hybridization (MERFISH) and ultrasensitive single molecule array (Simoa) assay development in conjunction with David Walt's lab https://t.co/y8Hf8yrzuj. Reach out if interested.

[Gibson Lab @GibsonLab]

We are hiring a wet-lab research associate to work on multiplexed error-robust fluorescence in situ hybridization (MERFISH) and ultrasensitive single molecule array (Simoa) assay development in conjunction with David Walt's lab https://t.co/y8Hf8yrzuj. Reach out if interested.

[Gibson Lab @GibsonLab]

We are excited to host Dr. @GorinGennady fresh PhD from @lpachter Lab - @Caltech.

"Stochastic foundations for single-cell RNA sequencing"

Today Nov 20th
4PM EST - Zoom

zoom link with ability to join email list on announcement page
https://t.co/GaqjcukXIR