Top Tweets for #spatialtranscriptimics
Comparing Performance of Imaging-based #SpatialTranscriptimics methods
#CosMx vs #MERFISH vs #Xenium
1k vs 500 vs 339 plex
93-gene overlap
FFPE Human Lung/Mesothelium Tumor Tissue Microarray
CosMX▶️highest transcript counts/cell
Xenium▶️lowest FDR & closest biological cell shape
Cell type detection
CosMx 9
MERFISH 6
Xenium 14 (UM) 18 (MM)
scRNAseq Label transfer helps
Xenium MM▶️the highest F1 score (cell segmentation precision)
@kchenken bioRxiv 2024
https://t.co/iWbfAWsSWv@
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