Jonathan Patrick Broadbent

Master's Computer Science // University of Toronto // Ontario Insititute for Cancer Research (OICR)

[Jonathan Patrick Broadbent @Jonbroad15]

My first paper published in Bioinformatics. We present a python package for doing machine learning tasks on RNA graphs. Check it out!

[Jonathan Patrick Broadbent @Jonbroad15]

@summerknocks Leafs song request: Peace in Silence by Bunt!

[Oxford Nanopore @nanopore]

Nanomix is tool that could remove the need for complex #epigenomic assays by leveraging native #nanopore sequencing.

At #nanoporeconf, @Jonbroad15 will discuss the potential of bringing this application closer to a point-of-care scenario, in the future: https://t.co/CFV3msMpD7

[Jonathan Patrick Broadbent @Jonbroad15]

I am participating in 2022 TCS Toronto Waterfront Marathon on October 16, 2022 at 8:00 A.M. EDT. Help me raise money by sponsoring me! https://t.co/HqaLoQtnmG

[Jared Simpson @jaredtsimpson]

nanopolish v0.14.0 released, with support for modification bam files (thanks @BonfieldJames and @chrisnrg) and compiling on M1 macs

[Jared Simpson @jaredtsimpson]

Rust bioinformatics programmers: is there an idiomatic way of processing records of a bam file in parallel? Examples appreciated!

[Jonathan Patrick Broadbent @Jonbroad15]

@ebioman @RuSt Hey did you figure out a solution for this? Currently struggling with the same problem.

[Boas Pucker @boas_pucker]

Engineered anthocyanin biosynthesis allows modulation of tomato fruit colours ranging from 'Crimson' over 'Magenta' to 'Indigo' #FlavonoidFriday (details: https://t.co/kYnzyeKax4)

[Jared Simpson @jaredtsimpson]

Thank you to my lab for the amazing nanopolish socks! I hope there's no bugs in this code, it would be very hard to fix now

[Jonathan Patrick Broadbent @Jonbroad15]

@jim_elevator @YunWilliamYu Great to see it's finally out! congrats Jim.