PCI Genomics

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[PCI Genomics @PCIgenomics]

📑 New @PCIgenomics recommendation, by @CamilleMrcht
https://t.co/Jw5TA8dGdX

On the work of Rusakovich et al. (2026) Benchmarking circRNA Detection Tools from Long-Read Sequencing Using Data-Driven and Flexible Simulation Framework

#OpenAccess #Bioinformatics

[PCI Genomics @PCIgenomics]

📑 New @PCIgenomics recommendation, by Fabienne Malagnac
https://t.co/GLJihWNkLA

On the work of Justine Colou et al. (2025) Genome of Trichoderma gamsii strain T035 a promising beneficial fungus in agriculture

#OpenAccess #Bioinformatics

[PCI Genomics @PCIgenomics]

"Using explainable machine learning for monitoring marine biodiversity" - the latest PCI Genomics recommendation from @RaphaelMourad https://t.co/MB63j4pUnD

Based on this preprint by Houria Braikia, Sana Ben Hamida, and Marta Rukoz: https://t.co/L2C7BTN4ev

[PCI Genomics @PCIgenomics]

📑 New @PCIgenomics recommendation, by @Gecko1990
https://t.co/W68EO1bcyG

On the work of Pierre Brézellec (2025) The identification of the replicative helicase loader gene dciA within the Helicobacter pylori genome challenges current replication...

#OpenAccess #Bioinformatics

[PCI Genomics @PCIgenomics]

@PatrickForterre A recommendation of this preprint from Pierre Brézellec: https://t.co/LylNzAvKyU

[PCI Genomics @PCIgenomics]

New PCI Genomics recommendation from @PatrickForterre: "Interactome study reveals extensive interaction of the SARS-CoV-2 virus spike protein with coiled-coil proteins mostly involved in cytoskeletal functions" - https://t.co/rhBZQjaJMe

[PCI Genomics @PCIgenomics]

All Recommenders are invited to the PCI Genomics Recommenders’ Meeting! We will present our goals and discuss possible ways to improve user experience and engagement. Two online meetings: Feb 9th, 18h CET OR Feb 11th, 15h CET. If not a Recommender yet, send us an email!

[PCI Genomics @PCIgenomics]

@miriplass 📝 A recommendation of this preprint from @GermainPl, Jiayi Wang, and @markrobinsonca
: https://t.co/PRGSfIuiyF

Thank you to the recommender and two reviewers for evaluating this manuscript! 🙌

[PCI Genomics @PCIgenomics]

"Bulk RNA-seq to the rescue of differential expression analysis in single-cell transcriptomics" 🧫 📑 A new PCI Genomics recommendation by @miriplass: https://t.co/bdEz4yil4q

[PCI Genomics @PCIgenomics]

📑 New @PCIgenomics recommendation, by @HeleneChiapello
https://t.co/ykVQ9GJurJ

On the work of Noé Robert et al. (2025) Evidencing strain-dependency of metabolic pathways within 1,494 lactic bacteria genomes with the in silico screening Prolipipe pipeline

#OpenAccess

[PCI Genomics @PCIgenomics]

🌐 New PCI Genomics recommendation: GrAnnoT enhances annotation transfer via pangenome graphs, connecting linear and graph-based genomes. 🔬 “a valuable pangenome toolkit addition — fast, conservative, reproducible.” ➡️ https://t.co/fcIK2kwGP8 #Pangenome #OpenScience

[PCI Genomics @PCIgenomics]

📄 Preprint: https://t.co/SnRxbaLcAx

Big thank you to the recommender and two reviewers!

#Genomics #Polyploids #Bioinformatics #PlantGenomics

[PCI Genomics @PCIgenomics]

🧬 New recommendation! HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids, by Simon Rio and colleagues.

✨ Recommended by Lucia Campos Dominguez who praised its scalability for complex polyploids

🔗 Recommendation: https://t.co/n6xtEaYcVm

[PCI Genomics @PCIgenomics]

📑 New @PCIgenomics recommendation, by @sishuowang
https://t.co/f42gYoH8ih

On the work of David Robelin et al. (2025) localScore: an R package to highlight optimal and suboptimal segment in a sequence with associated p-values computation

#OpenAccess #Bioinformatics

[PCI Genomics @PCIgenomics]

New PCI Genomics recommendation! Of this preprint: "Sexual reproduction is controlled by successive transcriptomic waves in Podospora anserina"

Recommendation by Sébastien Bloyer: https://t.co/jBhjRR2ZuM

Preprint from Bidard and colleagues: https://t.co/3AU4fY7xbF

[PCI Registered Reports (@[email protected]) @PCI_RegReports]

NEW: Statement from the PCI RR Managing Board on the withdrawal of Infant and Child Development as a PCI RR-friendly journal, and the decision by Wiley to refuse preprints that have been peer-reviewed by @PeerCommunityIn / @PCI_RegReports

Read here➡️https://t.co/NHhuNKdA0o

[PCI Genomics @PCIgenomics]

@sagitaninta There are also other PCI-friendly journals that will consider publishing manuscripts evaluated at PCIs: https://t.co/EgKwd91Z7S

[PCI Genomics @PCIgenomics]

@sagitaninta Upon recommendation at a PCI, authors have the option of publishing their manuscript for free in the Peer Community Journal, which is indexed in Scopus: https://t.co/tD5HqlBY6l

[PCI Genomics @PCIgenomics]

If you are interested in applying to be a recommender but Genomics doesn't fit your expertise, then be sure to check out the other communities under the PCI umbrella: https://t.co/f2YL3QgCIe

cc' @PeerCommunityIn

[PCI Genomics @PCIgenomics]

We are looking for new recommenders to join Peer Community in Genomics! The position of “recommender” is analogous to an associate editor at a traditional journal. However, recommenders are not obliged to handle any manuscripts.

[PCI Genomics @PCIgenomics]

Peer Community In represents an innovative alternative to the publishing norms in most fields. As we are entirely grant-funded, our model is free for authors and readers: the focus is on the research.