Single Cell Portal

Web app for single-cell genomics data, reducing barriers and accelerating research. Built at the Broad Institute.

[Single Cell Portal @SingleCellBroad]

We wrote a white paper! In it, we highlight how SCP accelerates single-cell omics research by making it easy to share and explore data.

Read it at https://t.co/Kf5cSpLakv

[Single Cell Portal @SingleCellBroad]

How does gene expression relate to disease mechanisms and gene regulatory networks? 

New pathway search and visualization features in Single Cell Portal give insight!

Learn more: https://t.co/T7OkoILfkx

#SingleCell #Biology #GeneRegulatoryNetwork

[Single Cell Portal @SingleCellBroad]

Did you know Single Cell Portal comprehensively validates #singlecell data *before* you upload?  Authors learn of issues in < 10 seconds -- not minutes or hours -- with clear, actionable messages.

Click "Create study" at https://t.co/3zYkanRlIU to try SCP's fast, easy upload. ⚡️

[Single Cell Portal @SingleCellBroad]

Each month, over 22K users from > 160 organizations use Single Cell Portal.  Increase the impact of your science by creating a study at https://t.co/3zYkanRTys!

[Single Cell Portal @SingleCellBroad]

Single Cell Portal now supports exploring #multiome ATAC data!  Simply upload your #singlecell ATAC fragment data, then visualize and filter it in a genome browser.  Learn more about comparing chromatin accessibility and gene expression: https://t.co/kg2vQJTmTK

[Single Cell Portal @SingleCellBroad]

Check out three new #singlecell studies on molecular cartography in mouse intestine by Toufic Mayassi, Chenhao Li and colleagues in Xavier lab @broadinstitute:
https://t.co/cD842R8OjR, https://t.co/MbC40wf1df, https://t.co/N8dEjg42UI

[Single Cell Portal @SingleCellBroad]

@meschro 📷 @meschro Astrocyte regional specialization is shaped by postnatal development. Interactive visualizations available at https://t.co/NESkqLNOwV and https://t.co/BpHi1hIJNC

[Margaret Schroeder @meschro]

Very excited to share our pre-print and my thesis work on the postnatal development of astrocyte regional heterogeneity, which includes an integrated dataset of >1.4 million single nuclei transcriptomes in mouse and marmoset brains (now available online)!

https://t.co/jT88PILBXo

[Single Cell Portal @SingleCellBroad]

Read more at https://t.co/tWRMFk3Grx and give us feedback on how you would use a cell annotation service at https://t.co/owKmlRscev

[Single Cell Portal @SingleCellBroad]

How might AI ease the burden of cell type annotation? SCP tried out Cellarium Cell Annotation Service (CAS) on a 10x PBMC dataset to find out. Explore our demo (CAS) study: https://t.co/SEvQqoiiFC

[Single Cell Portal @SingleCellBroad]

Exploratory DE results are now available for new AnnData studies! Create a study, upload your AnnData file, then find and visualize differentially expressed genes. https://t.co/3zYkanRlIU

[Single Cell Portal @SingleCellBroad]

Since 5/2020, Single Cell Portal has had:
- 582K active users (currently 215K / year, up 42% YoY)
- 2.3M page views
- 3.7M user searches for studies and genes

And we host 76M cells: 48M public, 28M private.

Explore, upload, share! https://t.co/3zYkanRTys

[Single Cell Portal @SingleCellBroad]

As a study owner, you can upload your differential expression data for visualization in Single Cell Portal https://t.co/RCZk1igUSS

[Single Cell Portal @SingleCellBroad]

Differential Expression data in Single Cell portal can now be filtered for more focused exploration. https://t.co/MvlcY726oH

[Single Cell Portal @SingleCellBroad]

Quickly and easily view post-filtering DEGs in a dot plot. https://t.co/WuIsgWzaSe

[Single Cell Portal @SingleCellBroad]

Want to explore single cell studies, or publish your own?

Check out https://t.co/XC29LQlfWI for a recent overview of Single Cell Portal: search, differential expression, cell filtering, spatial transcriptomics, study creation, public vs. private studies, and more!

[Single Cell Portal @SingleCellBroad]

Filter plotted cells to refine visualizations in Single Cell Portal!
Drill down to visualize gene expression for one or more experimental variables. Read about the feature (https://t.co/SJCIWUR4I1) or dive into the documentation (https://t.co/Yozt8U2UFg).

[Single Cell Portal @SingleCellBroad]

And if you have questions or additional comments, drop us an email at [email protected]

5/5

[Single Cell Portal @SingleCellBroad]

New feature alert: you can now upload AnnData files to power visualizations to Single Cell Portal! https://t.co/FCIMsms3q6

(image from https://t.co/jh5wky98e7)

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[Single Cell Portal @SingleCellBroad]

If you’re interested in uploading AnnData to SCP, let us know by liking this tweet or by filling in this 2-minute survey: https://t.co/jTv0G5kX2E

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