Biology Quantitative Methods Papers

New Biology Quantitative Methods papers from all experimental, numerical. Thank you to arXiv for use of its open access interoperability.

[Biology Quantitative Methods Papers @XTXI]

Multi-type branching inference on contact trees with application to COVID-19

Augustine Okolie, Johannes Müller, Eno Akarawakc, Isaac Ajiboye
https://t.co/9OcUnZHBgu [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚖𝚊𝚝𝚑.𝙳𝚂 𝚚-𝚋𝚒𝚘.𝙿𝙴]

[Biology Quantitative Methods Papers @XTXI]

BioHarness: Substrate-Aware Evidence Assembly for Biomedical Question Answering across Literature, Knowledge Bases, and Biological Atlases

Meng Xiao, Chuan Qin, Jinmiao Chen, Yihang Cheng, Yuanchun Zhou, Hengshu Zhu
https://t.co/RPZlFdEAk6 [𝚚-𝚋𝚒𝚘.𝚀𝙼]

[Biology Quantitative Methods Papers @XTXI]

CollaboratoR: A scalable workflow for collaborative data entry and management

Patrick Bills, Ashwini Ramesh, Lais Petri, Alejandra Martinez Blancas, Kelly Kapsar, Amar Deep Tiwari, Phoebe L. Zarnetske
https://t.co/YohiEbRriN [𝚚-𝚋𝚒𝚘.𝚀𝙼]

[Biology Quantitative Methods Papers @XTXI]

Adaptive COVID-19 Trajectory Forecasting Using MAB-Inspired Ensemble Weighting

Hamed Karami, Javier Redondo Anton, Geunsoo Jang, K. Selcuk Candan, Gerardo Chowell
https://t.co/gsRDP4X7hU [𝚚-𝚋𝚒𝚘.𝚀𝙼]

[Biology Quantitative Methods Papers @XTXI]

DART: A design-aware microfluidic chip paradigm for real-time live-cell image analysis

Johannes Seiffarth, Matthias Pesch, Lukas Scholtes, Dietrich Kohlheyer, Hanno Scharr, Katharina Nöh
https://t.co/2VcCdvaNme [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚌𝚜.𝙲𝚅]

[Biology Quantitative Methods Papers @XTXI]

Archetypal Microbiome Profiles as Indicators of Nitrous Oxide Emission States in Activated Sludge

Cheng Chen, Marcelo Seppi, Samir Suweis, Andreas Froemelt, Eberhard Morgenroth, Andreas Scheidegger, Carlo Albert
https://t.co/MvxVKcBkM3 [𝚚-𝚋𝚒𝚘.𝚀𝙼]

[Biology Quantitative Methods Papers @XTXI]

Agentic Discovery of Non-Canonical Antimicrobial Peptides with AMPGAN v3

Jay Jung, Xiaohan Zhang, Shenghan Song, Mahmoud Sayedahmed, Chijian Xiang, Yunong Xu, Ahmed AbdelKhalek, Severin T. Schneebeli, …
https://t.co/gARX9AopKz [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚌𝚜.𝙰𝙸 𝚌𝚜.𝙻𝙶]

[Biology Quantitative Methods Papers @XTXI]

Too Few or Too Many? Sample Size Estimation for Differential Abundance Studies

Michael Agronah, Benjamin M. Bolker
https://t.co/2YRInMmuke [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚜𝚝𝚊𝚝.𝙰𝙿]

[Biology Quantitative Methods Papers @XTXI]

MultiMolecule: a modular ecosystem for biomolecular sequence-model workflows

Zhiyuan Chen
https://t.co/HycBmFDOHv [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚌𝚜.𝙻𝙶 𝚚-𝚋𝚒𝚘.𝙱𝙼 𝚚-𝚋𝚒𝚘.𝙶𝙽]

[Biology Quantitative Methods Papers @XTXI]

The Essential Role Of Ribosomal Feedback In Bacterial Cell Growth And Metabolic Load – A Systems Biology Approach For Unveiling Shared Resources Regulation Within Synthetic Genetic Circuits

Chiara Cimolato, Elisa Gaetan, …
https://t.co/DHmySowjNA [𝚚-𝚋𝚒𝚘.𝚀𝙼]

[Biology Quantitative Methods Papers @XTXI]

Balancing label resolution and computational cost in dynamical models of lipid metabolism

Paul Jonas Jost, Christoph Thiele, Jan Hasenauer
https://t.co/KZhfs5CMfO [𝚚-𝚋𝚒𝚘.𝚀𝙼]

[Biology Quantitative Methods Papers @XTXI]

A likelihood-based framework for simultaneously learning both noise and growth dynamics using biologically-informed neural networks

Rebecca M. Crossley, Ruth E. Baker
https://t.co/5hFmZhql7B [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚚-𝚋𝚒𝚘.𝙿𝙴]

[Biology Quantitative Methods Papers @XTXI]

OCOO-T: A Simple and Scalable Virtual Cell Model for Transcriptional Perturbation Response Prediction

Danning Jiang, Zheming An, Yalong Zhao, Lipeng Lai
https://t.co/3Fhadpqzfi [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚌𝚜.𝙰𝙸 𝚌𝚜.𝙻𝙶 𝚚-𝚋𝚒𝚘.𝙶𝙽]

[Biology Quantitative Methods Papers @XTXI]

EasyNano: rapid epitope-targeted nanobody CDR design via differentiable distogram optimization with ESMFold2

Yue Hu, Wanyu Cheng, Junqing Wang, Yingchao Liu
https://t.co/EA5Wni69Fr [𝚚-𝚋𝚒𝚘.𝚀𝙼]

[Biology Quantitative Methods Papers @XTXI]

A structural causal framework for interventions on evolutionary accumulation models

Ramon Diaz-Uriarte, Íñigo Ríos-Arroyo, Iain G. Johnston
https://t.co/sZz5Yn7OEY [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚚-𝚋𝚒𝚘.𝙿𝙴]

[Biology Quantitative Methods Papers @XTXI]

Interpretable enzyme function prediction via sparse autoencoder features of ESMC across the microbial protein universe

Yue Hu, Wanyu Cheng, Junqing Wang, Yingchao Liu
https://t.co/cPsgqmazFo [𝚚-𝚋𝚒𝚘.𝚀𝙼]

[Biology Quantitative Methods Papers @XTXI]

Seeing Below the Limit of Detection: A Censored-Poisson Bayesian Latent-Growth Change-Point Detector (the Span Detector) for Serial ctDNA in HR+/HER2- Metastatic Breast Cancer
https://t.co/5ZRdIqIFJe [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚌𝚜.𝙻𝙶 𝚜𝚝𝚊𝚝.𝙼𝙴]
💬Code: https://t.co/CIy7lVFMSZ

[Biology Quantitative Methods Papers @XTXI]

Continuous biome representations from Earth observation embeddings

Maxwell B. Joseph, Flávia De Souza Mendes, Dieu My T. Nguyen, Camile Sothe, Christopher B. Anderson
https://t.co/bpTihLsjnk [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚚-𝚋𝚒𝚘.𝙿𝙴 𝚜𝚝𝚊𝚝.𝙼𝙻]

[Biology Quantitative Methods Papers @XTXI]

OmniBioTwin: A System-of-Twinned-Systems Framework for Health Digital Twins

Zhaohui Wang, Yu Huang, Jiang Bian
https://t.co/lKZVNn3Qr5 [𝚚-𝚋𝚒𝚘.𝚀𝙼 𝚌𝚜.𝙰𝙸]

[Biology Quantitative Methods Papers @XTXI]

Spatial Model Selection and Uncertainty Quantification: Comparing Continuous and Discrete Wound Healing Models

John T. Nardini, Jana L. Gevertz
https://t.co/jOIRnpc1hz [𝚚-𝚋𝚒𝚘.𝚀𝙼]