Bioinformaticx

Bioinformatics methods & tools #genomics #proteomics #metagenomics #assembly #virology #plant #biology #sequencing #DNA #eDNA #aDNA #genes #ML #AI #science #DB

[Bioinformaticx @Bioinformaticx]

Hash functions in nucleotide sequence analysis

https://t.co/tibMGv1lbP

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

Haplotype-resolved genome assemblies of BJ and IMR-90 human fibroblast cell lines reveal extensive structural variation and enable reanalysis of historical sequencing data

https://t.co/9y4Bf6afqx

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

MBGC2: Boosting compression via efficient encoding of
approximate matches in genome collections

https://t.co/R2QRra0GhW

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

PQSDC: a parallel lossless compressor for quality scores data via sequences partition and run-length prediction mapping

https://t.co/dLWfGgjiso

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

FALCON2: compression-based metagenomic classification of ancient viruses

https://t.co/6TMUjAhG66

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

An evaluation of computational methods for reconstruction of human viral DNA genomes

https://t.co/ipi8HYrCVu

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

Learning a generalized graph transformer for protein function prediction in dissimilar sequences

https://t.co/dvmjpdblgx

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

Intra-host genomic diversity and integration landscape of human tissue-resident DNA virome

https://t.co/s8n0sxmW3p

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

Fully resolved assembly of Cryptosporidium parvum

https://t.co/rbPmBfAsNN

#bioinformatics
#bioinformaticx

[Bioinformaticx @Bioinformaticx]

A super-pangenome of the North American wild grape species

https://t.co/RjVRiuFZlL

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

AlcoR: alignment-free simulation, mapping, and visualization of low-complexity regions in biological data

https://t.co/BtDz1kiNDr

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data

https://t.co/hL3LjkQ4of

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

Efficient mapping of accurate long reads in minimizer space with mapquik

https://t.co/Ipn62BMNZS

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

Efficient short read mapping to a pangenome that
is represented by a graph of ED strings

https://t.co/CHNcOn4MJ0

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

Scrooge: A Fast and Memory-Frugal Genomic Sequence Aligner for CPUs, GPUs, and ASICs

https://t.co/XeWp78OTJI

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

mlf-core: a framework for deterministic machine learning

https://t.co/16re7KwuVd

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data

https://t.co/8ElLYnYKlT

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

DeepOM: Single-molecule optical genome mapping via deep learning

https://t.co/HWqD82EWAr

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

Unmasking the tissue-resident eukaryotic DNA virome in humans

https://t.co/2x72OFMv51

#Bioinformatics
#Bioinformaticx

[Bioinformaticx @Bioinformaticx]

Foldcomp: a library and format for compressing and indexing large protein structure sets

https://t.co/o0Mq4jgExI

#Bioinformatics
#Bioinformaticx