Bioregistry

An integrative registry of biological databases, ontologies, and nomenclatures. Tweets by @cthoyt

[BridgeDb is @[email protected] @BridgeDbProject]

RT @[email protected]
Blog: "BridgeDb NWO grant update #5: BioHackathon, Webservice, Bioregistry " https://t.co/sRJiYWCFQw
https://t.co/qwAZuR8PtR

[Biocuration Conference 2023 @biocuration2023]

Reminder: the travel grant application deadline to attend #biocuration2023 is in two weeks! Please visit https://t.co/RSS2gqvx9e for details and requirements.

[Bioregistry @bioregistry]

Biomappings uses the Bioregistry to ensure its content uses standardized prefixes and local unique identifiers ❤️

[Daniel Himmelstein @dhimmel]

@choldgraf The #Manubot python package can create bibliographic metadata or rendered references (via @csl_styles) for any DOI, PubMed ID, ISBN, URL, or any of thousands of other @bioregistry CURIEs. Retrieves metadata from many places including @zotero translators. https://t.co/mtoCDst1zj

[Bioregistry @bioregistry]

ARKs are cousins to CURIEs :)

[𝐀𝐑𝐊 𝐀𝐥𝐥𝐢𝐚𝐧𝐜𝐞 @arks_org]

New software for running your own ARK service! @UTSCLibrary @kstapelfeldt https://t.co/f7KpYxN0sm

[Bioregistry @bioregistry]

Our manuscript "Unifying the identification of biomedical entities with the Bioregistry" is now published in @ScientificData!

https://t.co/z9He4JkmyO

[Bioregistry @bioregistry]

Add the following to the top of your LaTeX to make nice Bioregistry-supported references:

\newcommand{\curie}[2]{\texttt{\href{https://t.co/fIPMp065SF}{{#1:#2}}}}

(over)use it like:

\curie{mesh}{C120793}

[Bioregistry @bioregistry]

Thanks to @harry_caufield for submitting a new prefix request for the MOSAiC Ontology!

It's available at https://t.co/p0DImM6nmA

CC @brycem maybe you can help make this record even more rich.

[Bioregistry @bioregistry]

@sanyabt11 Wow, that's amazing! If there were any URIs that didn't get converted, we'd be happy to work with you to add more prefixes to fill in the rest :)

[Bioregistry @bioregistry]

Thanks @chrismungall for submitting a new prefix for @uniprot's Association-Rule-Based Annotator (ARBA) namespace 🧬

📎 Discussion: https://t.co/2f1H5pmhmB

📺 Tutorial for making your own new prefix request: https://t.co/vLA35t5ZDF

[Bioregistry @bioregistry]

Thanks to @gottloburrhythm for submitting a new prefix for the Academic Event Ontology (AEON) developed by @TIBHannover for the @conf_id project 🚀

🌐 https://t.co/VfFe6Jn8KL

[Bioregistry @bioregistry]

The solution came from @andrewgilmartin's post on the @CrossrefOrg blog in 2015! Read up at https://t.co/5GRfwj0wyN

[Bioregistry @bioregistry]

An issue about the regex for DOIs was posted by @wouter99999 on the @IdentifiersOrg issue tracker (https://t.co/MjHSihB8qX)

Will be interesting to see if the https://t.co/SjWJ10NmuM team will address it, in the mean time we've already got a fix at https://t.co/qDNsz2doMO

[Bioregistry @bioregistry]

You can curate a collection of prefixes in the Bioregistry for https://t.co/G3zHuRCSMD that auto-generate prefix maps, SHACL files, and more. two examples:

- @sparontologies resources: https://t.co/WOa8Od3und
- semantic web prefixes: https://t.co/2HlF4anuFx

[Bioregistry @bioregistry]

@cdsouthan @cthoyt Yes, no other registry (https://t.co/SjWJ10NUkk, N2T, et.) has a totally open data, open code, open governance model. Bioregistry can just pull from them and align any efforts they make independently, but Bioregistry is the sustainable way to move forwards.

[Bioregistry @bioregistry]

ERM is registered in the Bioregistry at https://t.co/Kas6jfzFJO - this is the most sustainable way for potential users to get high quality metadata about this resource 🚀

@nanocommons #RiskGONE @NanoSolveIT @Gov4Nano @Sbd4Nano

[Bioregistry @bioregistry]

Do you reference OMIM entries or OMIM phenotypic series in your data, metadata, database, etc.?

Help us figure out the best way to represent OMIM in the Bioregistry - join the discussion at https://t.co/eaUkk3FUm1

[GRAPE @GRAPElib]

From 🍇 V 0.1.19, we integrated @bioregistry ❤️ in the graph retrieval, which includes all of the @OBOFoundry #KnowledgeGraph made available by @harry_caufield's KGOBO!

🚄 Just enable the flag, and you are set to go!

[Bioregistry @bioregistry]

happy to see more resources using Bioregistry to move towards more standardized, reusable semantics! Thanks @LucaCappellett6 for the awesome implementation

[GRAPE @GRAPElib]

From 🍇 V 0.1.19, we integrated @bioregistry ❤️ in the graph retrieval, which includes all of the @OBOFoundry #KnowledgeGraph made available by @harry_caufield's KGOBO!

🚄 Just enable the flag, and you are set to go!

[Bioregistry @bioregistry]

Thanks to @SierraMoxon for adding prefixes for the drugs and interactions in the "Curated Drug-Drug Interactions Database"

🌐https://t.co/rNjsl4cz7m