Christoph Hahn

Biology, Bioinformatics | husband & father | curious, fascinated, frustrated, exhausted, excited, hungry, surprised ..

[Christoph Hahn @C__Hahn]

https://t.co/rgtNhhRvjQ

[Keisuke Motone / 元根 啓佑 @KeisukeMotone]

Our preprint is out! We hacked the @nanopore sequencer to read amino acids and PTMs along protein strands. This opens up the possibility for barcode sequencing at the protein level for highly multiplexed assays, PTM monitoring, and protein identification!
https://t.co/hVdNFa7ti4

[Jeff Nivala @jeffnivala]

Yesterday we released our preprint showing how a @nanopore array morphs into a protein sequencer... Achieving LONG reads (hundreds of amino acids) and the capability to re-read individual molecules multiple times, all thanks to a protein-processive molecular motor.

[NatureEcoEvo @NatureEcoEvo]

Evolutionary dynamics of whole-body regeneration across planarian flatworms https://t.co/X9nQkwjduV

[Christoph Hahn @C__Hahn]

Embracing the command line: my unexpected career in computational biology https://t.co/dFOw8y1xgM

[European Reference Genome Atlas @erga_biodiv]

Great news from COPO!

Reliably brokering sample #metadata is an essential step of the reference #genome production workflow.

Congratulations on this impressive milestone 🎉

@BioGenEurope @EarlhamInst

[Rob Waterhouse also @rmwaterhouse.bsky.social @rmwaterhouse]

Structural #genome annotation with BRAKER & TSEBRA - workshop will take place on the 21st Nov. from 9am to 3pm, registration is free but capacity is limited to 35 participants - so hurry! https://t.co/8AjrUTPyyB #training #bioinformatics #genomics #biodiversity @erga_biodiv ERGA

[NENG HUANG @csuhuangneng]

Thrilled that our work “compleasm: a faster and more accurate reimplementation of BUSCO” is now published in Bioinformatics! 🎉 Huge thanks to our amazing lab @lh3lh3 and to the reviewers’ valuable comments. 🙏 Journal paper: https://t.co/nmbyvvJq0c

[Dave Moi @steg0s4urus]

In a post #AlphaFold world, we can use protein structures in ways we never could before. Can we build phylogenies with them? Are they any good? Yes! Foldtree (https://t.co/GarG48Y21B) surpasses traditional sequence-based methods, even for closely related proteins.👇

[Christoph Hahn @C__Hahn]

Indeed, thanks @philippresl, @EcoEvoGraz, @UniGraz. Check it out - even if you're not interested in #phylogenetics. It's about democratizing complex computational analyses and #reproducibiltiy through #scalability and #portability (#containers)..

[Philipp Resl @philippresl]

Interested in #phylogenetics using whole #genome/#transcriptome/#proteome data? @C__Hahn and I are very happy to share phylociraptor with you: It facilitates explorative and reproducible phylogenomic analyses of thousands of genes and genomes. Preprint: https://t.co/IX2UpBzYZ8

[Philipp Resl @philippresl]

@C__Hahn Available on GitHub: https://t.co/0kpUtstyB1

[Philipp Resl @philippresl]

Interested in #phylogenetics using whole #genome/#transcriptome/#proteome data? @C__Hahn and I are very happy to share phylociraptor with you: It facilitates explorative and reproducible phylogenomic analyses of thousands of genes and genomes. Preprint: https://t.co/IX2UpBzYZ8

[bioRxiv @biorxivpreprint]

Phylociraptor - A unified computational framework for reproducible phylogenomic inference https://t.co/aACuZbl5D7 #bioRxiv

[bioRxiv Bioinfo @biorxiv_bioinfo]

Phylociraptor - A unified computational framework for reproducible phylogenomic inference https://t.co/TG8ys1YsMf #biorxiv_bioinfo

[Misha Kolmogorov @MishaKolmogorov]

Our CARD pilot paper with @KimberleyBill10 @cornelisblauw @BenedictPaten and many others is online! We establish a wet + dry lab protocol for single nanopore flow cell sequencing, which generates state-of-the-art SNP and SV calls + assemblies. https://t.co/0P7utXOtx6

[Kenny Workman @kenbwork]

Snakemake has many technical benefits over Nextflow for writing bioinformatics workflows.

But there is no platform that supports the language.

Today we are releasing native support for Snakemake on the LatchBio Cloud.

https://t.co/ZC8NVILOIB

[Johannes Köster (@johanneskoester.bsky.social) @johanneskoester]

The small variant calling benchmarking initiative of @NGSCN1 is published. Thanks a lot to all the contributors and @dfg_public for the funding. (1/x)

[Christoph Hahn @C__Hahn]

Visual opsin gene expression evolution in the adaptive radiation of cichlid fishes of Lake Tanganyika | Science Advances https://t.co/2bX28mWoVL

[Javier Santoyo @jsantoyo]

Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community. #Metagenomics #MicrobiomeMockCommunity #DNAresearch https://t.co/82fUJkFsDG

[Institute of Fisheries Management @IFMFish]

How do you stress the importance of replicates to improve the accuracy of #eDNA sampling?

Use pizza of course 🍕🍕🍕

A great talk by @N_P_Griffiths

#fishimp2023