Beth Cimini Lab 🔬💻 📊

Sen Group Leader & CZI Imaging Scientist, Broad Institute, coding+pretty pictures. She/her. @BoSoxBioBeth @[email protected] @bethcimini.bsky.social

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

I've made a Twitter Community for Bioimage Analysis- feel free to join and share widely! I'll fully admit this is an experiment, but hopefully a fun one. 😁 https://t.co/Jjzb3hZE9A

[Beth Cimini 🔬💻 📊 @BoSoxBioBeth]

I'm probably mostly done with this place, if you want help being done with it too - here's my advice!

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

If you want and need some help switching - pre-populate your feed with 70+ microscopists and image analysts (and counting). Come say hi over there! https://t.co/P7kk1Eb4f5

[BioImaging North America @BioimagingNA]

The next Careers Speaker Series presentation is tomorrow, Nov 7 at 12 pm CT, hosted by the Early Career WG!

Join as David Joy, Denali Therapeutics, shares about his career journey
https://t.co/7kLCghZnoL

Register to attend
https://t.co/rlJUN8R3Az

#Careers #Imaging #BioImaging

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

Cont: @SingaScope @JofMicroscopy @Fr_BioImaging @GerBI_GMB @CanBioImage @advanced_unit @AustralianMMS @BioImagingUK @DBioimaging @PPBioImaging @SwissBIAS @CzechBIAS Can we get a boost reaching all the microscope users out there? Thanks!

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis https://t.co/JXKlKSUjK9

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

Cont: @LatamBioimaging @afribioimaging @ASBMB @HHMIJanelia @MicroscopyToday @EuLiMI1 @MicroscopyViews @micro_au @LightMicroAus @QuarepLimi @GIDEproject @EuroBioImaging @RoyalMicroSoc @focalplane_jcs Can we get a boost reaching all the microscope users out there?

[AI4Life Team @AI4LifeTeam]

Life scientists! The 3rd (and last) AI4Life Open Call is officially open! 🎉 We are offering deep learning support for bioimage analysis. Apply now!

🔗 https://t.co/IVdVzik01N
⏳ Deadline: December 10, 2024
@REA_research #AI #Bioimaging #Imaging #ImageAnalysis #DeepLearning

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

@IAMichaelNelson @BoSoxBioBeth OMG this image is everything

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

Paper link is here one more time- let us know what you think! https://t.co/wFrTQ1fPOH

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

@experimentIV, @IAMichaelNelson, @SimonFlyvbjerg, @perrinepgil, @stk_tp, @JwPylvanainen, @liorpyt, @ariannaravera_, @annika_reinke1, @yousr_rekik, @StrambioLab, @DanielThedie, @VirginieUhlmann, Oliver Umney, @laura_wiggins13, + co-org/partner-in-many-crimes @UWMadisonLOCI (7/x)

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

So thank you to @Co_Biologists, @J_Cell_Sci, and @petebankhead, @RogerDAntuono, @mycroscopy, @juliafrodri, @cfusterbarcelo, @haesleinhuepf, @helenajambor, @martinjones78, @florianjug, @ahklemm, @ilastik_team, @lankylaste, @gaby_gmartins, @SaraMcArdle1, @cmci_, @ArrateMunoz (6/x)

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

This was an INCREDIBLE team effort to brainstorm and then fill out the topics during the workshop, then actually constructively write a paper with so many authors - I cannot thank everyone enough for making it such a lovely, positive experience. (5/x)

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

I won't say too much here, because I'd love you to actually go read the paper (it's open access!), but briefly, we cover who bioimage analysts are, how we add value, how we can prove to our bosses we add value, and what we need from other groups/communities to thrive (4/x)

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

(Side note - several participants were kind enough to share their thoughts on the workshop over at Focal Plane - https://t.co/ssbgFvYv7q) We had a great few days with old and new friends, and came up with our ideas for a community call-to-action (3/x)

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

This paper grew out of a great @Co_Biologists - workshop back in February called "Effectively Communicating Bioimage Analysis"; 30 amazing folks were kind enough to travel to the UK for four days to identify and talk through our community's biggest hurdles. (2/x)

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

New from me and a huge cast of amazing bioimage analysts in @J_Cell_Sci - - "The crucial role of bioimage analysts in scientific research and publication" https://t.co/wFrTQ1fPOH . Hop into 🧵to learn more! (1/x)

[Robert Haase @haesleinhuepf]

The word cloud #gitbob made from the #I2K2024(virtual) program 😃

[Robert Haase @haesleinhuepf]

🚨 #preprint alert 🚨
"Towards Transparency and Knowledge Exchange in AI-assisted Data Analysis Code Generation": Using direct LLM-integration in discussions about Github issues and pull-requests, a.k.a. #gitbob.

Let me guide you through it in a short 🧵
https://t.co/kheMo46Ey0

[Bitesize Bio @BitesizeBio]

#TheMicroscopists podcast with @YorkBioimaging has reached an incredible 250k streams! Thank you to everyone who helped make this happen and supported the podcast, including our sponsor @zeiss_micro, all our brilliant guests, and our amazing listeners! https://t.co/bkfvp1GdnI