Dominika Siegieda

leveraging bioinformatical and statistical tools to explore plant🌱-microbe🦠🍄 interactions in agriculture
bluesky:

[Dominika Siegieda @D_Siegieda]

Enjoying my fish&chips here in Dublin, just before the #ecfg17 Opening Ceremony 💛

[Dominika Siegieda @D_Siegieda]

First preprint from my Preludium @NCN_PL funded project is live 🤎

[bioRxiv Microbiology @biorxiv_micrbio]

Pilidium lythri: A Climate-Driven Disruptor of Plant-Associated Microbiomes and Ecological Stability https://t.co/Xw4THHgvX1 #biorxiv_micrbio

[Dominika Siegieda @D_Siegieda]

New Illumina MiSeq i100 qith higher yield, faster run time, no washes between runs, better quality of 2nd read and *colorful lights* seems fun!!

[Dominika Siegieda @D_Siegieda]

Anyone wants to meet on the other side?

[Dominika Siegieda @D_Siegieda]

This fantastic illustration of my scientific interests, created by ChatGPT, captures my research in microbiome science, plant pathology, and bioinformatics perfectly, showing the exciting blend of lab work, coding, and natural elements that drive my work every day.

#ScienceArt

[Ecology of Soil Microorganisms @ecology_soil]

Ecology of Soil Microorganisms will take place in Helsinki on 15.-19. June 2025. Find more information here: https://t.co/Of5aKbCMqI

[Dominika Siegieda @D_Siegieda]

It's already been a month here at @cml_biodiv, but only today the Dutch weather started 😂 wasn't prepared for such a quick change 😬

[Dominika Siegieda @D_Siegieda]

Still can't believe these two do basically the same thing.

[Geert van Geest @geertvangeest]

Based on the table of @AlbertVilella I created this graph of (minimum) sequencing cost vs (maximum) yield. Pretty strong correlation. Long read sequencing methods from @PacBio and @nanopore doing remarkably well #NGS #Bioinformatics.

[Dominika Siegieda @D_Siegieda]

@frantecol I'm loving this 'dear dr professor' opening 😍

[Dominika Siegieda @D_Siegieda]

@BullCrys @BullCrys , abstract submission started today 🤓

[Dominika Siegieda @D_Siegieda]

🍄Fungal scientists, I'm thinking about attending #IMC12 next year. Any of you planning to go? Have you been to #IMC11?

[12th International Mycological Congress (IMC12) @IMC12NL]

👏Meet the organisers behind the IMC12 congress!

🍄@IMA_Mycology
🍄@NedMycVer
🍄@_Westerdijk_

Thank you for supporting the #IMC12 Congress and advancing the future of #Mycology.

👉https://t.co/bt899pOteW

#Maastricht

[GlobalFungi @globalfungi]

GlobalAMFungi: a global database of arbuscular mycorrhizal fungal occurrences from high‐throughput sequencing metabarcoding studies - the final paper is online!
https://t.co/ceJklkrvLW

[Dominika Siegieda @D_Siegieda]

I'm so happy that I got in! Can't wait to dive deep into bioinformatics of whole-genome sequencing 👩🏼‍🎓
...and to see a bit of Valencia, Spain 🇪🇸

https://t.co/hyfaG0TH0k

[Dominika Siegieda @D_Siegieda]

@Vadym_Chibrikov Last week I reviewed paper with 'major revision' recommendations, but co-reviewer wanted to accept and linked some papers 'Authors could use in introduction section'. Did I mention all 3 papers had the same authors? 😶

[Dominika Siegieda @D_Siegieda]

@KamounLab @MDPIOpenAccess what's even funnier is that it's a 'Journal of Fungi' 💀

[Jeff Doser @jeffdoser18]

Very excited to announce my new R package spAbundance for fitting single-species and multi-species spatially-explicit N-mixture models, distance sampling models, and GLMMs. Includes options for random intercepts/slopes and species correlations. #rstats https://t.co/8GQyTbznqh.

[Panagiotis Sarris @PanosSarris]

Dear community,
the samples we obtained from a deep cave revealed a bacterium with a weird phenotype... it produces a glowing compound that phosphoresce (in normal light).
Any idea of what species this could be?

[Dominika Siegieda @D_Siegieda]

@BullCrys I guess so... But probably later on, when they figure out all the the workshops and other important stuff.

[Dominika Siegieda @D_Siegieda]

@BullCrys @LucigenCorp Ouch, strawberry fruit is difficult with DNA extraction, let alone RNA! 😱 happy you found the way to do it.

[Dominika Siegieda @D_Siegieda]

@BullCrys So maybe... see you there? 😃