Arthur Declercq

PhD student at @CompOmics (VIB-UGent), @VIBLifeSciences
Bioinformatics | Machine learning | Immunopeptidomics

[Arthur Declercq @DeclercqArthur]

Very excited to present my poster about #MS2Rescore and open modification immunopeptidomics searches at #ASMS2023! Interested? Come see me at posterboard ThP 375, see ya there!

[Tine Claeys @TineClaeys1]

Presenting my (wrinkly) poster on lesSDRF at #ELIXIR23 🤗 Come by if you want to know how to annotate your #proteomics data without any hassle, and get your #metadata easily in SDRF format.
Not in the neighbourhood? You can read our preprint here: https://t.co/Elp3qAUCO0

[Arthur Declercq @DeclercqArthur]

Ready for an exciting week at #ASMS2023!

[CompOmics @compomics]

Join @CompOmics and friends at #ASMS2023! Posters, workshops, talks, and #BioinformaticsHub sessions on #PTMs, #MachineLearning, #MetaProteomics, #DIA, #EchoMS, and more:

[Peptide-based Immunotherapy @LabWalz]

The new and updated models of MS2pip core library show greatly improved peptide identifications in #immunopeptidomics!
https://t.co/9Uqn7B5sZz

[Robbin Bouwmeester @RobbinBouwmees]

DeepLC now supports psm_utils. So no more parsing of the input file! Works directly on msms.txt, idXML, mzIdentML, and many more file formats.

Transfer learning is now available in the GUI and python library on PyPI.

See the latest release here:
https://t.co/RlbQyZwOSO

[Arthur Declercq @DeclercqArthur]

Exciting news! Our latest publication on MS²PIP is now available in the Nucleic Acid Research web server issue. Check it out here https://t.co/LfSHCwxrt4 or go directly to https://t.co/WAN21H8vsJ to check out the new features 🚀 #CompOmics #NucleicAcidResearch #MS2PIP

[Ralf Gabriels @RalfGabriels]

As a spin-off from MS²Rescore, we developed psm_utils: a Python package to read and write various PSM file formats and to handle peptidoforms, PSMs, and PSM lists through a user-friendly and high-level API.

Docs: https://t.co/c4lhxJxLOY
Preprint: https://t.co/NMCRisGR6O

[Pastel BioScience @PastelBio]

MS2Rescore: Data-driven rescoring dramatically boosts immunopeptide identification rates | https://t.co/0l7okBNMbO #proteomics

[Arthur Declercq @DeclercqArthur]

I'm very excited to announce my research paper on boosting immunopeptide identification rates with MS²Rescore is in press at @molcellprot ! Go check it out at https://t.co/x713hjFlaV

[Arthur Declercq @DeclercqArthur]

I'm very excited to be amongst the guest speakers for the upcoming EPIC-XS computational proteomics event.

[EPIC-XS @epic_xs]

It really is free and less than 2 weeks away. Register now for the EuPA and EPIC-XS workshop and webinar on Computational Proteomics https://t.co/r42wuNgN8E

[Robbin Bouwmeester @RobbinBouwmees]

Mass spec software is all good, but have you even felt the intensity of your peaks? (x-axis=retention time, y-axis=MS1 m/z, z-axis= intensity) From now on I will only inspect my data after 3D printing it first ;)

[Arthur Declercq @DeclercqArthur]

Proud to present my poster p201 abstract 230) on greatly improving #immunopeptidomics identifications at #EuPA2022
Come have a chat on 06/04 in the Händel room during the poster session!

[CompOmics @compomics]

Everyone ready for an exciting @EuPAProteomics conference in #Leipzig? Here's an overview of the Ghent delegation at #EuPA2022:

[CompOmics @compomics]

The last CompOmics group meeting of 2021 went a bit... meta. Yes, this is the real deal: 11 pioneering group members are having a VR group meeting in Horizon Workrooms. Amazing technology; this is a game changer! While we're working from home, all our meetings will be here.

[Arthur Declercq @DeclercqArthur]

Excited to present our work on #immunopeptidomics rescoring with MS²Rescore at #HUPOReCONNECT 2021 poster presentation (P11.09) today at 16:00 UTC

[CompOmics @compomics]

Here's an overview of @CompOmics at #HUPOReCONNECT 2021. Checkout out posters today at 16:00 UTC, Sven's talk on #ionbot Friday at 0:55 UTC, and the session "The Future of Proteomics" Lennart is chairing with @mlaval6, also on Friday.

[Arthur Declercq @DeclercqArthur]

@DavidGomezZep @RobbinBouwmees Hi @DavidGomezZep, thanks for the interest! We are aware of the increased use of PEAKS in immunopeptidomics and are already working on implementing it. It should be available in the near future! Keep an eye on the https://t.co/3yhQSx5K8g!

[Ralf Gabriels @RalfGabriels]

MS²Rescore is available at https://t.co/sE3EdGoa6k. Try it out, and let us know what you think. Feature requests are always welcome!
New #immunopeptidomics models coming online very soon, GUI and Windows support are in the works.

[Arthur Declercq @DeclercqArthur]

The word is out! Check out our immunopeptidomics rescoring tool at https://t.co/3yhQSx5K8g or read all about it on bioRxiv https://t.co/CxWn7Pt2pk.

[CompOmics @compomics]

Manuscript on our top performing immunopeptidomics identification engine now out in bioRxiv: https://t.co/02WXesdZ2f - if you are interested in 30% more unique identified immunopeptides, or if you care about top performance even at 0.1% FDR (!!), then definitely check it out!