Greene Laboratory

Greene Lab @ the Department of Systems Pharmacology at @PennMedicine. News account used for Greene Lab website. You might prefer to follow @greenescientist

[Greene Laboratory @GreeneLab]

“Manubot is a series of software packages, as well as some of the glue to tie them together, that lets you turn a GitHub repository into a self-published manuscript.”
https://t.co/TgdsMXkQ4j

[Greene Laboratory @GreeneLab]

Prodigious #SVG tutorial created by our frontend developer @VinceRubinetti. Learn how to code SVGs by hand with 6 practice exercises. https://t.co/4E7xZAnm5k

[Anthony Gitter @anthonygitter]

Our paper "Open collaborative writing with Manubot" is now available at @PLOSCompBiol. #Manubot uses Markdown + GitHub for continuous publication. https://t.co/YIwMROCvg1 1/8

[Daniel Himmelstein @dhimmel]

Videos from #FORCE2018 now online. 🎥

See my talk on #Manubot at https://t.co/PQBG0OhAWi (playlist links to other talks).

Thanks @force11rescomm for the great recording & releasing it under a @creativecommons license… wish all conferences did this!

[Greene Laboratory @GreeneLab]

Projects include:

• Manubot: a system for writing scholarly manuscripts on GitHub https://t.co/AefAzpvEHl

• Adage: neural network based gene set analyses https://t.co/z2OUtDXWVN

• Tribe: crowdsourced gene collections https://t.co/VgVW2eGTqk

Where big data & biology meet!

[Greene Laboratory @GreeneLab]

Interested in making webapps to help research diseases & make science more accessible, transparent & reproducible?

The @GreeneLab is hiring a frontend software engineer in #Philly.

Job includes #uiux, #reactjs #webdev #css #js #git #opensource

https://t.co/VMTOEhFcW7

[Daniel Himmelstein @dhimmel]

Manubot v0.2.0 now released at https://t.co/YvxQewwZqo including the `manubot cite` command-line utility. Easily generate CSL metadata and references for 1000s of bibliographic styles from standard citation identifiers, such as doi:10.1038/nbt.3780; pmid:29424689; arxiv:1407.3561

[FORCE11 @FORCE11rescomm]

"Revolutionizing scholarly writing with the Manubot: a foreshadow of publishing's future" by @dhimmel.

Come see this and other amazing talks at #FORCE18 this October in Montreal! https://t.co/p9yjfCe9WH

[Greene Laboratory @GreeneLab]

Yesterday we celebrated with @nanditagarud who will be joining @uclaeeb as a new faculty in 2019!

We are so excited for you Nandita!

[@[email protected] @David_McGaughey]

#GI2018 @GreeneScientist shows that PLIER can be applied to many datasets and you can use the latent vars to ID function across OTHER datasets. https://t.co/lyIcBG5h6m I think this is the PLIER package: https://t.co/hmj9ZptJJ7

[Prachee Avasthi @PracheeAC]

Casey’s lab develops methods to analyze big biological data and makes these tools/data accessible for the rest of us. If you want a brilliant and inspiring postdoc mentor with a refreshing irreverence for the status quo, look no further! https://t.co/rhBYzZQSP3

[Daniel Himmelstein @dhimmel]

The accepted manuscript of the @Sci_Hub Coverage Study published in @eLife (typeset version in the next few weeks) https://t.co/ulhoDTmf1L

Thanks @arielswn, Levernier, Munro, @SteveMcLaugh, @gedankenstuecke, and @GreeneScientist for your contributions!

[Anthony Gitter @anthonygitter]

@anshulkundaje @GreeneScientist One takeaway is that everyone was so helpful and constructive when reviewing new text. Working toward a common goal made it very different from typical manuscript review.

[Project Cognoma @ProjectCognoma]

In a rebuke to the closed world of scientific research, volunteer coders help @Penn take on cancer! By @roxanneshep https://t.co/ykHVRD57sI

[Project Cognoma @ProjectCognoma]

#Cognoma Launch Party tonight at @MilkBoyPhilly. Details at https://t.co/Vp1TCxuEfb. Get ready for the celebration and historic raffle! https://t.co/skGffk77gb

[Project Cognoma @ProjectCognoma]

The #Cognoma Launch Party 🎉 will be 6–9PM Wednesday, October 11, 2017
at @MilkBoyPhilly. Hope to see you there! https://t.co/Vp1TCxuEfb

[Daniel Himmelstein @dhimmel]

Manubot's use of Continuous Integration mentioned in @NatureNews at https://t.co/fJNspdklWD. Manubot uses CI for continuous publication!

[GigaScience @GigaScience]

Research parasites wanted. Q&A w/ @GreeneScientist & @thebyrdlab on the #researchparasite & #researchsymbiont awards https://t.co/CHPQ7gY13e

[Kurt Wheeler @datawheeler]

I just wrote my first ever blog post! It's about the Data Refinery, a project I've been working on for a while:

https://t.co/wzyUF8AEeA

[Childhood Cancer Data Lab @CancerDataLab]

New blog post from @datawheeler about the #DataRefinery we're building!

https://t.co/usCOFaQvaC