Jan Stevens

PhD student @univgroningen | Computational biophysicist | CG Martini

[Jan Stevens @JanAdStevens]

Happy to share that our perspective on whole-cell modelling using #Martini is out in @FrontChemistry!
To showcase the capabilities of the #Martini ecosystem, we build a model of an entire cell with near atomistic resolution. #ComputationalMicroscopy
https://t.co/JqmhkReo7A

[Nishita Mandal @MandalNishita]

Happy to share the final publication from my PhD work now out in JCTC! @JCIM_JCTC

https://t.co/eCZlONtpTe

Thanks to @JanBrezovsky1 @CG_Martini and Prof. Adolfo Poma for their mentorship. Special thanks to all co-authors @JanAdStevens @surpeta_b, Carlos S. B. and Aravind S. T.

[Enrico Carlon @CarlonEnrico]

DNA plectonemes are intertwined loops which form when a single DNA molecule is stretched and twisted. Plectonemes are found in bacterial and eukaryotic cells and play important role in several biochemical processes as gene expression etc...
1/5
https://t.co/xeZNScD4K1

[CECAM @cecamEvents]

The CECAM-@mddbEU workshop on "Pushing the frontiers of molecular dynamics simulations" has started today in Lausanne & online!
Interested in learning more about how MDDB is creating the first unified database for MD simulations? Visit https://t.co/6v9A3f8bHJ

[Siewert-Jan Marrink @CG_Martini]

Various PhD/post-doc positions available to work on synthetic cells, including purely computational projects in our group ! https://t.co/jZQXUGqifA

[Adolfo Poma @PomaResearch]

Glad to share our collaborative effort with @CG_Martini @JanBrezovsky1 @MandalNishita to study emergent protein tunnels by coarse-grained methods incl. our 💪 GōMartini 3 approach. Guess which method is recovering good agreement with all-atom MD.

https://t.co/CfPtqHwSqp

[Siewert-Jan Marrink @CG_Martini]

Martini 3 OliGo̅mers: A Scalable Approach for Multimers and Fibrils in GROMACS - Great work from Bart Bruininks, now in JCTC: https://t.co/4XgTMkuGEy

[Fabian Grunewald @fabigrue]

On the way to #ACSFall2024. Looking forward to meeting friends and making new ones. On Thursday (4110400) I will present our (@ricalessandri, @JanAdStevens, @SouzaPauloCT) advances on #polyplyMD for macromolecule modeling. Drop me a DM for anything #Martini3 you wann talk about.

[MDDB @mddbEU]

Register for our next workshop with @cecamEvents to discuss the recent developments and upcoming challenges in #MolecularDynamics simulations.

🗓️October 7-9, 2024
📍Lausanne, Switzerland & Online

More details➡️https://t.co/xRvFIEjpdf

#MDDB #FAIRdata #openscience

[Membrane Enzymology @MembraneEnzymo1]

It took some time, but Anna’s @amborowska beautiful work on the exchange mechanism of ASCT2 is now out. Together with twitterless Gabriella and @CPaulino @alisa_garaeva @rheinbergerj @CG_Martini
https://t.co/41ulyTYiBh

[Brady Johnston @bradyajohnston]

I have been working like absolute crazy over the past two months for this - #MolecularNodes 4.2 is now released for #b3d 4.2

A huge number of new features - which I will cover some here.

- Selections using @mdanalysis selection language are updated live.

[Chelsea Brown @chelseabrowncg]

I wrote a piece for this issue of Microbiology Today! I got to reflect on the rise of AI and what we need to consider going forward 🖥️

You can check it out here 👇

[Jan Stevens @JanAdStevens]

You can no fly through our cell model on a poster 🤯 Amazing renders of our cell model!!

[Matthieu Montes @MatthieuMontes]

Presenting @VTX_mol at the Strasbourg summer school of Chemoinformatics @SFCi_fr with our augmented poster thanks to #schol_ar @M2d2Team @MaximeMARIA @LeCnam @gemellyn @sguionni

[Cees Dekker @cees_dekker]

I’m thrilled to be able to announce that we were granted a NWO Summit grant entitled ‘Evolving Life from Nonlife’ (EVOLF) with 40 million euro for a 10-year project aimed to cross the gap between non-life and life by assembling a living synthetic cell from lifeless biomolecules!

[matthieu Chavent @Matth_Chavent]

New preprint from a nice collaboration between the @IpbsToulouse Integrative Biological NMR team and my lab ( LMGM @CbiToulouse ): "Coarse-graining the recognition of a glycolipid by the C-type lectin Mincle receptor " spearheaded by @noriegamaxime

https://t.co/9sxJ7l0lBX

[Markus Deserno @MarkusDeserno]

Hello, my absolutely lovely membrane peeps! Would you maybe, pretty-please, let me proudly steer you to a MINI-REVIEW I recently wrote? It’s on asymmetric membranes in general, and differential stress in particular—subjects that I am massively interested in right now!

1/26

[Chelsea Brown @chelseabrowncg]

Great to see this review paper out! 🥳
I had a lot of fun helping with this, the first paper from my time here in Groningen! Check it out here 👇

[Ivan Maslov @IvanMasl0v]

We explored the mechanisms behind slower diffusion of cytosolic proteins at the cell poles of E. coli using SMdM microscopy

Polyribosomes❌
mRNA❓
Protein aggregates, cell aging✅

Happy to be the part of Linnik @LenOvosch et al. team!
@MembraneEnzymo1

https://t.co/DykJDkavuy

[Jan Stevens @JanAdStevens]

Wow, these simulations look stunning! Can’t wait to delve into the details and learn more about MEGA mucins 🤯

[Jan Stevens @JanAdStevens]

Happy to have had a small MD contribution to this amazing work by @lyanvdsleen. Definitely worth a read!

https://t.co/gs9RAsJr66

[Ivan Maslov @IvanMasl0v]

Single-molecule optical tweezers reveal salt dependence of the interdomain interactions in a membrane transporter OpuA in nanodiscs

Congratulations to @lyanvdsleen and all the authors!
@JanAdStevens @CG_Martini @BiophysK 👏@MembraneEnzymo1

@CellReports:
https://t.co/UscjEWT3Re