Karla Sidón

Phytoplankton, ecology and omics

[Joachim Schork @JoachimSchork]

Visualize genomic data with ease using gggenomes, an R package that extends ggplot2 to handle and display genomic information intuitively. Whether you’re comparing genomes, analyzing features, or showcasing synteny, gggenomes provides the tools you need to turn complex genomic data into clear, informative visualizations.

Why use gggenomes?

✔️ Genomic-focused visualizations: Specifically designed for handling genomic data, including features, alignments, and comparative analysis.
✔️ Versatile and modular: Create detailed and layered plots for diverse genomic scenarios with flexibility for customization.
✔️ Built on ggplot2: Leverages ggplot2’s familiar framework, making it easy for users to adapt and enhance their visualizations.

The example visualization shown here is taken directly from the gggenomes GitHub repository, demonstrating how it transforms genomic data into compelling plots: https://t.co/FzE2wNzHeP

Curious to learn more about creating data visualizations in R and using tools like ggplot2 and its extensions? Check out my online course, "Data Visualization in R Using ggplot2 & Friends!"

Further details: https://t.co/ztlEzoEDWv

#tidyverse #statisticsclass #RStats #database #datavis #R #ggplot2 #Python #VisualAnalytics

[Cameron Thrash @jcamthrash]

Diverse community of rhizobia-diatom symbioses fixes nitrogen in the South Pacific gyre https://t.co/DT9l8gSbca

[Cameron Thrash @jcamthrash]

Latitudinal Diversity in Circadian and Light-Sensing Genes in an Ecologically Vital Group of Marine Picoeukaryote Algae https://t.co/VZIy3VU1ya

[Cameron Thrash @jcamthrash]

Rare taxa modulate the emergence of dominants in microbial communities https://t.co/bEU2Xek5tF

[Cameron Thrash @jcamthrash]

A geothermal amoeba sets a new upper temperature limit for eukaryotes https://t.co/O2fONBuiZd

[mBio @mbiojournal]

What decides the “winners” in a microbial community? It's not only competitive traits; rare microbes play a key role. This #mBio study offers a “nomination-voting” model, showing how rare taxa collectively shape which species become dominant. #microbiome https://t.co/tb3u4VIaBu

[Ming "Tommy" Tang @tangming2005]

An introduction to Python for R users https://t.co/2Fq9aihQDP

[Cameron Thrash @jcamthrash]

Drift, dispersal limitation and homogeneous selection as a key processes shaping prokaryotic community assembly in marine sediments https://t.co/xmhNxp6iIz

[Cameron Thrash @jcamthrash]

SAR11 ecotypes across ocean basins change with depth due to changes in light and oxygen https://t.co/l1Y5hG9pJC

[Cameron Thrash @jcamthrash]

Half of microbial eukaryote literature focuses on only twelve human parasites https://t.co/VoPMl4ztSf

[ISME - International Society for Microbial Ecology @ISME_microbes]

Two weeks left for students and postdocs to apply to receive support for international research, training, or lab visits.
Submit your application by 1 October 2025!
Learn more and apply:
🔗https://t.co/KCrvzi6EVb
#MicrobialEcology #microbes

[Cameron Thrash @jcamthrash]

EcoFoldDB: Protein Structure‐Guided Functional Profiling of Ecologically Relevant Microbial Traits at the Metagenome Scale https://t.co/ZVlFhPa6kB

[Asuncion @asundelosrios]

Happy to share our upcoming paper in ISME Commun on pioneer microbial communities, including viruses, establishing after Antarctic glacier retreat! #PolarMelt @pepa_anton @RebecaAdr @EstherRubioPort @Lbanyeras 👉https://t.co/DSj5QzX6zr

[James Bradley @DrBradBrad]

2 Postdoc vacancies: Microbial dormancy in the cryosphere
📢 PLEASE RT

Experimental:
🧬 Single cell microbial activity measurements, flow cytometry, omics, biogeochem

Modelling:
🖥️ Bioenergetics, thermodynamics, ecological, biogeochem

☀️ Marseille, France
‼️ Apply by 30 Sept

[Cameron Thrash @jcamthrash]

Differences in metagenome coverage may confound abundance-based and diversity conclusions and how to deal with them https://t.co/gHbphfCYk2

[Cameron Thrash @jcamthrash]

Nitrogen Fixation Potential in Bathypelagic Sediment of the Ice‐Covered Arctic Ocean Revealed Through Long‐Term Stable Isotope Incubations https://t.co/Jyo7eESSv9

[Cameron Thrash @jcamthrash]

Towards a trait-based framework for protist ecology and evolution https://t.co/pwhy3iGJea

[Cameron Thrash @jcamthrash]

Bacteriochlorophyll reveals estuarine hypoxia and anoxygenic photosynthetic carbon fixation https://t.co/O6mvmTtsZd

[Cameron Thrash @jcamthrash]

Unexpected decline in the ocean carbon sink under record-high sea surface temperatures in 2023 https://t.co/GbKlJOsFqQ

[Cameron Thrash @jcamthrash]

Phosphorus constrains global photosynthesis more than nitrogen does https://t.co/Mi0hX8ROg5