Systems Immunology Lab

Systems Immunology Lab at @GeneCenter_LMU

[Systems Immunology Lab @KlughammerLab]

📢Our new package SlideCNA for spatial copy number alteration detection in spatial transcriptomics data is now out in Genome Biology: https://t.co/YBXDwGzuQL

[Systems Immunology Lab @KlughammerLab]

Paper: https://t.co/fgj0tG7BRH
Code: https://t.co/JKh2hSACS4
Test it online ⬆️

[Systems Immunology Lab @KlughammerLab]

📢BoReMi for manual registration of spatial expression data 🧬 and microscopy images 🔬. When automated tools fail 🥺 BoReMi is your friend💪. Lightweight Jupyter interface, Single cell matching, Non-linear alignment, and more. #spatial_omics #registration #groundtruth

[Systems Immunology Lab @KlughammerLab]

📰Paper: https://t.co/A2cSxjyZcq
🧬Data: https://t.co/lRUrcVj6Mu
🗺️CellxGene: https://t.co/EUUY9BmMQZ
🗂️HTAN data coordination: https://t.co/LDQEfwxvVM
🛠️Code: https://t.co/7tRcGqcTRT

[Systems Immunology Lab @KlughammerLab]

📢 Out in Nat Med: Single-cell, nucleus & 4 types of spatial expression data across the clinicopathological diversity of metastatic breast cancer!
We find surprising within-patient stability, spatial EMT phenotypes, local immune exclusion, and more + comparison across methods🔗➡️

[Itai Yanai @ItaiYanai]

"What do you most hope spatial molecular profiling will help us understand?"
Cell Systems asked @FertigLab @DrMingyaoLi @CosciaLab @KlughammerLab Qing Nie @CJM_lab @ahmetfcoskun and me this question and today you can check out our answers!
https://t.co/Ap2sqFR2GQ @CellSystemsCP

[QMB Munich @MunichQbm]

For our first student talk of the day, we welcome @momo_1995mo, QBM student at @KlughammerLab! Mohammad is presenting part of his work and connecting physiological and pathological immune activation scenarios! 🧪
#qbmretreat23

[QMB Munich @MunichQbm]

Now on stage is QBM student @JLQuattro, from @KlughammerLab!
Moving the day towards methods, Jan is talking about TACCO, a tool for deciphering high-dimensional biological data. Go, Jan! 🌮

[Cecilia Domínguez Conde @CDominguezConde]

📢 PhD position available in my lab ‼️

🧑‍🔬 🧑‍💻 The candidate will investigate the molecular regulation of lymphocyte development using cutting-edge single-cell multimodal approaches

✉️ Reach out via DM or email to discuss in more detail

➡️ Apply via https://t.co/oPr9Hi9VJ8

[Systems Immunology Lab @KlughammerLab]

@razoralign 9

[QMB Munich @MunichQbm]

🥳🥳APPLY NOW!!!🥳🥳👇👇QBM is open for applications! 👇👇Please RT & like!🎊🎉
apply here: https://t.co/af3syVPeiD
and check out our PhD program:🧪🧫🧬🔬⚗️🩹
https://t.co/nItW0htckD

[Gene Center Munich @GeneCenter_LMU]

😲🫢Hard to believe, 39 years ago in May, the research focus "Fundamentals and Applications of Gene Technology" was founded at a ceremony in the Senate Hall of @LMU_Muenchen
🧬The birth of today's Gene Center!
🤔😃Sounds like we can have a big party next year!🥳🥂🎉😀🍻😃🪩💃🕺

[Systems Immunology Lab @KlughammerLab]

📢Come work with us on turning high-dimensional data into biomedical insights. Postdoc or Research Scientist position in single cell & spatial transcriptomics/ compBiomed available. Applications from all quantitative fields 💻 welcome!
@GeneCenter_LMU
⬇️https://t.co/5rpxR9dEeh

[MagesLab @MagesLab]

🌮Tacco is now published in Nature Biotechnology: https://t.co/axrX4PRsmj And even more importantly, the package is now also available on conda 🐍: https://t.co/cIXKMTKOaJ #SingleCell #spatialomics

[J_Watter @JLQuattro]

With tags :) #scOmics #scRNAseq #spatial #spatialTranscriptomics #Visium #MERFISH #CODEX #Annotate #Celltypes #OptimalTransport #LMU_Muenchen

https://t.co/64SW0VVhZJ

@KlughammerLab @broadinstitut @mor_nitzan

[Systems Immunology Lab @KlughammerLab]

Cheers to @JLQuattro on his first paper, and to everyone that collaborated for TACCO to happen! 🥳
@MunichQbm @GeneCenter_LMU @MagesLab

Check the full paper on https://t.co/GFkBc9FJpU

[Nature Biotechnology @NatureBiotech]

TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics https://t.co/uNOPd6m2OE

[QMB Munich @MunichQbm]

A few weeks ago we just started with a dot product!!😌 inspired by the book of @Sentdex @daniel_kukiela we've created an CNN like LeNet from rare @ThePSF Thanks to the students that have attented the course! Was fun teaching🥰👍👍! @GeneCenter_LMU @HIDAdigital @KlughammerLab

[FIWI Vienna @FIWIvienna]

🧬Proud to have contributed to this amazing analysis of genome-scale, base-resolution DNA methylation profiles across 580 ❗️ animal species. Congratulations to the entire team and to @KlughammerLab, @Bocklab and @CeMM_News

[Systems Immunology Lab @KlughammerLab]

📢Come work with us on turning high-dimensional data into biomedical insights. Postdoc position in single cell & spatial transcriptomics/ computational biomedicine available. Applications from all quantitative fields 💻 welcome! @GeneCenter_LMU ⬇️https://t.co/raKLKW4GDo