Microreact

Open data linkage, visualization and sharing for genomic epidemiology and phylogeography @thecgps @bdi_oxford Funded by Wellcome & Li Ka Shing foundation.

[Microreact @MyMicroreact]

https://t.co/TRT0BwDkHq

[Microreact @MyMicroreact]

@CoolenJordy @van_jakko All back up and running now - thanks for bearing with us.

[Microreact @MyMicroreact]

Thanks for reporting - Normal service resumed - might have been too much turkey - thanks for bearing with us :-)

[Microreact @MyMicroreact]

great to see @myMicroreact being utilised to interpret epi-linked sequence data @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk

[Microreact @MyMicroreact]

great to see @myMicroreact being utilised to interpret epi-linked sequence data @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk

[Quadram Institute @TheQuadram]

Since COVID-19 hit the UK in March, we've been at the forefront of genomic sequencing – sequencing over 18,000 samples.

Our new photo essay explores the collective effort of the Quadram, @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk: https://t.co/nJUrKVhvDx

[Microreact @MyMicroreact]

RoomRater Microreact edition: cheery flowers, newly minted genomic epi', but cat has been staring at @mymicroreact trees for too long - 10/10 @KCMellor

[Kate Mellor @KCMellor]

Celebrating #InternationalWomenInScienceDay #WFH with fine feline company. Proud to have finished my genomic epi PhD during lockdown and to be working with the awesome @pneumowatch team #WellcomeGenomeWomen @sangerinstitute

[Microreact @MyMicroreact]

Genomics of SARS-CoV-2 in The Philippines - Great to see Microreact use for delivering insight as part of @geco_phl @inezmedado @RITMPH

[GECO @geco_phl]

We've also made a @MyMicroreact project to take a look at what we know about #SARSCoV2 in the #Philippines so far (using all the shared GISAID and NCBI genomes). Take a look! https://t.co/snbabcdJRi

[Microreact @MyMicroreact]

Great to see Microreact making an appearance in this important announcement @TheCGPS @bdi_oxford

[University of Oxford @UniofOxford]

We’re pleased to announce a donation of £100 million from @INEOS to establish the new INEOS Oxford Institute, helping us to combat one of the world’s greatest healthcare challenges - antimicrobial resistance >> https://t.co/GRX9Aejuyc

[Microreact @MyMicroreact]

@gringene_bio @bioinformAnt @TheCGPS @CovidGenomicsUK @MRCClimb @sciolato Also, here's a thread showing a quite prominent (and continually inspiring) fellow countryperson viewing SARS-CoV-2 data within NZ via Microreact (via another friend @Joepdl ) https://t.co/EnsHCeaEwn

[PHF Science @PHFScience]

Prime Minister @jacindaardern made a surprise visit to ESR today to say thanks for the hard work and long hours our staff have put in during the COVID-19 pandemic. She was fascinated by how we are helping to understand the latest outbreak through genome sequencing

[Microreact @MyMicroreact]

@gringene_bio @bioinformAnt @TheCGPS @CovidGenomicsUK @MRCClimb Hi @gringene_bio - here's a previous thread where we highlighted placing NZ at the centre point of the projection (in response to our friend @sciolato who highlighted similar issue: https://t.co/dmXj536DNy

[Microreact @MyMicroreact]

Thank you for flagging @sciolato We had the team work tirelessly to sort out and here you go. This project also shows another new(ish) feature of being able to use emoji's as icons, and also linking directly to a Google Sheet. #OneLessKiwiproblem Aroha!

https://t.co/NsGm0Iljpc

[Microreact @MyMicroreact]

@sciolato @sciolato - we've not forgotten :-) We are looking into this!

[Microreact @MyMicroreact]

we are chuffed to see @jacindaarden lecturing @ESRNewZealand on SARS-CoV-2 lineages with Microreact ;-)

[PHF Science @PHFScience]

Prime Minister @jacindaardern made a surprise visit to ESR today to say thanks for the hard work and long hours our staff have put in during the COVID-19 pandemic. She was fascinated by how we are helping to understand the latest outbreak through genome sequencing

[Microreact @MyMicroreact]

@typeMAT12 @silargi Hi @typeMAT12 - absolutely, Microreact does not need trees for you to be able to look at your data - simply drag a csv (or link to a gsheet) - if lat/lons present you'll get a map - shout if you need any additional stuff for lineage display as the charting is an easter egg atm!

[Carlos Blondel @cjblondel]

Excited to share 1st preprint from our lab! Genomic analysis of clinical Campylobacter strains from Chile led by Veronica Bravo https://t.co/02oONVzpKF Great collaboration with @narjol1 and Lorena Porte, Thomas Weitzel @Clinicaalemana! @MyMicroreact link https://t.co/DoSjP88DJB

[Microreact @MyMicroreact]

and here's the link to the Google spreadsheet that sits behind the Microreact https://t.co/QZ9iRfdUDe

[Microreact @MyMicroreact]

Thank you for flagging @sciolato We had the team work tirelessly to sort out and here you go. This project also shows another new(ish) feature of being able to use emoji's as icons, and also linking directly to a Google Sheet. #OneLessKiwiproblem Aroha!

https://t.co/NsGm0Iljpc

[Microreact @MyMicroreact]

immense work from Khalil and Ben!

[Microreact @MyMicroreact]

NEW TREE VIEWER UPDATE: All projects now feature a vastly enhanced tree viewer (phylocanvas) that scales to 100s of thousands of leaves - here's a data linked tree of global SARS-CoV-2 genomes via the @CovidGenomicsUK Check out your projects. https://t.co/E13jkSmvuZ

[Microreact @MyMicroreact]

thats a 39904 leaf tree - we'd love to see much much bigger!

[Centre for Genomic Pathogen Surveillance @TheCGPS]

UPDATE: 22,218 SARS-CoV-2 @CovidGenomicsUK seen here within the global tree (n=33,904). Much improved tree viewer in @MyMicroreact along with global (pangolin) lineage distribution. Mammoth effort from across the UK sequencing and analysis centres https://t.co/ORzTDWhELU

[Iñaki Comas @icoes]

SeqCOVID Spain @MyMicroreact podemos ver la distribución de muestras y linajes en el tiempo y el espacio de los genomas generados en el consorcio.
https://t.co/NSmGkA7j4A
https://t.co/N8pzWJmINZ
Brought to You by Your Friendly Neighborhood @GaloGoig with help from @leosanbu