Nykter Lab

Developing computational methods for biomedical research at @TampereUni with the lead of prof. Matti Nykter.

[CoE Tumor Genetics @CoEinTG]

Spatial transcriptomics (and other -omics!) is a promising technology that offers more information about cellular systems. @KiviahoAntti gives us a taste of new discoveries with @NykterLab using spatial transcriptomic in prostate cancer tissue.
https://t.co/Pb8PCNk5bX

[Antti Kiviaho @KiviahoAntti]

Our investigation into the prostate tumor microenvironment is now out in Nature Comms: https://t.co/RGH9XdKo9B

We combined publicly available scRNA-seq data with in-house spatial transcriptomics samples to jointly anayze data from 120 patients. Here’s what we found 🧵 1/6

[CoE Tumor Genetics @CoEinTG]

Communication is important even at the intra-cellular level. @SiniHakkola @NykterLab explains its role in cancer development in our latest blog post: https://t.co/Fzaakysong

[Antti Kiviaho @KiviahoAntti]

Could club cells be the key to understanding prostate cancer therapy resistance? We performed integrative analysis on single-cell & spatial transcriptomics data from more than 100 patients. Preprint out now: https://t.co/s2OGansizW

[CoE Tumor Genetics @CoEinTG]

Tune in to our latest blog post to read about the fierce competition between lab technician and automation robot: "Can we still beat a robot?" by Juuso Vuorinen @NykterLab
https://t.co/v84a8osRGR

[Kirsi Rautajoki @KirsiRautajoki]

Congratulations to Ebrahim Afyounian and Thomas Fleischer @TF_82 for a good defence on Friday! We had a wonderful evening celebrating the closing of Ebrahim’s journey to PhD @NykterLab. 🥰

[HHyotyLab @HHyotyLab]

Our new study shows that immunological pathways differ in different subtypes of #type1diabetes and the involvement of #enteroviruses in the initiation of the process.  https://t.co/oxo2J52zrk

Privileged to work with the talented people from the @NykterLab and @RautajokiLab 🙏

[CoE Tumor Genetics @CoEinTG]

New blog out: “What are scientific studies made of?” by Lauri Ryyppö of @NykterLab

https://t.co/QUao3Khl9m

[Alfonso Urbanucci @AUrbanucci]

Another
@Prostatakreft
#blueribbonpin has been appointed for #prostatecancer #research! Congrats Dr Sinja Taavitsainen (https://t.co/uRU8QS9NqE) for the brilliant defence vs @jweischenfeldt . Supervision of Prof. #MattiNykter @NykterLab #Tamperepcrc @TampereUniMET @TampereUni

[RautajokiLab @RautajokiLab]

Today we had a great recreational day at #Ahtialanjärvi with @NykterLab, building nesting boxes for endangered bird species and observing some birds.

[Alfonso Urbanucci @AUrbanucci]

Come to talk ⁦@NykterLab⁩ at the poster19-line43 at the #aacr23 #prostatecancer #spatialtranscriptomics #spatialbiology #celltype #deconvolution

[Nykter Lab @NykterLab]

PhD students Tuomo Virtanen and Antti Kiviaho presenting their posters at #AACR2023. Come to talk about our work on chromatin conformation and spatial transcriptomics in prostate cancer.

[RautajokiLab @RautajokiLab]

@CoEinTG Fascinating updates and important discussions at the SAB (Scientific Advisory Board) meeting of the Centre of Excellence in Tumor Genetics today. Tomorrow we will continue with workshops to discuss further and deepen our collaborations.
#cancerresearch

[Alex Wyatt @ResearchWyatt]

Here’s our @Nature paper on v deep whole-genome sequencing of serial ctDNA and met tissue. @cherberts1, Matti, Joonatan et al applied new methods to give fascinating insight into temporal #ProstateCancer clonal complexity and evolution of resistance. 1/7 https://t.co/xTqXwj83JP

[Sigrid Jusélius Stiftelse @SigridJuselius]

Large grant recipients Steve Bova and Matti Nykter are reverse engineering the evolution of aggressive prostate cancer. The results can help develop new cures for prostate cancer.
https://t.co/RA69CRqbdi
@NykterLab @TampereUniMET @TampereUni
#EWAC2022 #cancer

[Nykter Lab @NykterLab]

New Tumor Genetics blog by Tomi Häkkinen. Hospital Data Lakes: Crunching Numbers To Cure Diseases https://t.co/7YDkf6KJxk

[Nykter Lab @NykterLab]

Long anticipated #snogfibtra2022 symposium ongoing in Helsinki. Three days of presentations on exciting top level neuro-oncology research. @Granberg_Lab @TampereUni

[Nykter Lab @NykterLab]

Nice discussion about prostate cancer and emerging treatment options in MTV Uutisaamu this morning. Thanks for invitation and this opportunity @MTVUutisaamu @Syopasaatio

[Mikael Marttinen @MikaelMarttinen]

Very excited to receive @SuomenAkatemia funding to continue studying human microglia in neurodegeneration! Big thanks to my mentors @zauggj @HiltunenLab and of course the members of the labs, and I look forward to continuing this field of research in @NykterLab @TampereUni

[Nykter Lab @NykterLab]

Prostate cancer research center seminar ongoing at Murikanranta. Two days of presentations and discussions on our ongoing work. @TampereUniMET