Ryan Reis

Jabbari Lab @ Carver College of Medicine MSTP M6G | Cancer, Bioinformatics, Immunology, Translational #singlecell #omics #Research

[Ryan Reis @Ryan_J_Reis]

World class NICU care here at Iowa! Incredible work by the physicians, nurses, and staff to make this possible

[KCRG-TV9 @KCRG]

Baby born at UIHC is world's Most Premature Baby https://t.co/9hutwB2Faj

[Ryan Reis @Ryan_J_Reis]

Baffling 🤯 Here’s to hoping that time and resources are increasingly given to support widely-used software that underlies modern medical research. Having dealt with this issue, and others very similar, I can only hope to express to you all how frustrating this can be

[sina @sinabooeshaghi]

(1/11) Genomics databases, like the SRA, host tons of data. But data access is challenging, driven largely by tooling. Below is a brief history on genomics data access. 🧵

[Ryan Reis @Ryan_J_Reis]

@AaronGoodman33 Would second the rec for La Regia. When’s the talk?

[Ryan Reis @Ryan_J_Reis]

Can’t wait to try this out. Seeing how much of our sequencing data gets thrown out pre- to post-alignment makes you wonder

[Ming "Tommy" Tang @tangming2005]

sc-SPLASH provides ultra-efficient reference-free discovery in barcoded single-cell sequencing https://t.co/AfYC09Eg3l

[Ming "Tommy" Tang @tangming2005]

chatomics! multi-omics data integration: a case study with transcriptomics and genomics mutation data https://t.co/zZOinlaJIE

[Stephen Turner 🦋 @stephenturner.us @strnr]

Founder Mode

[Dr. Glaucomflecken @DGlaucomflecken]

This is what finishing your general surgery rotation in med school feels like

[Ryan Reis @Ryan_J_Reis]

@iskander @theHumanBorch is one of the best out there

[Ryan Reis @Ryan_J_Reis]

@theHumanBorch @wusm_pathology Congrats!

[Ryan Reis @Ryan_J_Reis]

What 🤯🤯

[William Gibson @wgibson]

A new showing that even when AlphaFold 2 structures differ from the crystal structure, the predictions are often telling us something true about physical reality. You can dock compounds in them with high hit rates and the cryoEM shows the AF2 structure, not the crystal!

[Ryan Reis @Ryan_J_Reis]

@theHumanBorch Will definitely have to pick your brain once I’m able to read through it. I know of another project with a good amount of VDJ seq data this could help with

[Ryan Reis @Ryan_J_Reis]

Can’t wait to see this paper! One of the biggest challenges with this data is being able to predict antigen specificity. 5/5 sounds pretty great to me 🎯

[Ryan Reis @Ryan_J_Reis]

@LabWaggoner Amazing — thanks for sharing!

[Ryan Reis @Ryan_J_Reis]

Shout out to @LabWaggoner for constantly sharing cutting edge work, and big thank you to whoever or whatever algorithm runs this account!

If you’re looking for a high quality feed of science, give them a follow

[Ryan Reis @Ryan_J_Reis]

@Jeff_Mold Jabbari lab grad student here! Let me know how I can help

[Ryan Reis @Ryan_J_Reis]

@davisidarta Great — I’ll give it shot both with and without! Appreciate it!

[Ryan Reis @Ryan_J_Reis]

@davisidarta Can’t wait to try this out. Any comment on how or if this would work with samples that need integrating? I would think that without integration/dim reduction, many of the subpopulation specific markers may be due to artifact or technology used.

[Ryan Reis @Ryan_J_Reis]

@Jeff_Mold @ShainLab Sorry, I don’t do spatial at the moment. I would agree that spatial is a bit harder to judge and one would expect a bit of variation due to differences in cell types across locations. Maybe do multiple known samples to set cutoffs and go from there

[Ryan Reis @Ryan_J_Reis]

@UICancerBiology @UIowaCancer @Iowa_MSTP Thank you! Couldn’t have done it without the great students in the program.

Can’t wait to dive deeper into CTCL with the help of my committee