Sakcham

Research Fellow at EMBB research group SCELSE, CEE NTU

[Sakcham @SakchamB17]

Extracellular RNA (eRNA) in drinking water systems may be more than cellular debris—it could play important signalling and regulatory roles, while providing new insights into microbial persistence and antibiotic resistance.

https://t.co/WGffComYgu

[marek mutwil 🇺🇦 @LabMutwil]

Reading a scientific paper takes hours. No PI, no student, can keep up. And keyword search finds words, not ideas.

So we built a Research Process Graph: a new way to read the literature.

https://t.co/ndaFZyEQp7 🌱 1/7

[Satoshi Kawato 川戸 智 @KawatoSatoshi]

Circular genome comparison is now live in #gbdraw! 🚀 The built-in LOSATN instantly runs pairwise alignments and generates homology rings for your sequences, 100% in your browser! Try it out: https://t.co/ZA4FoGdp7l #bioinformatics #genomics #microbiology

[Huiluo Cao 曹慧荦 @hlcao]

Spatial and genetic constraints govern transcription–translation coupling and mRNA degradation in bacteria | Nature Microbiology https://t.co/gIVCqcSLBa

[Cameron Thrash @jcamthrash]

Microbe Decoder uncovers functional traits of microbes in microbiome datasets https://t.co/7vCQlPL1VU

[Cameron Thrash @jcamthrash]

Revised 16S rRNA V4 hypervariable region targeting primers enhance detection of Patescibacteria and other lineages across diverse environments https://t.co/JrImTBQQ9o

[Adam Steinbrenner @ADSteinbrenner]

We are excited to release the BAT! 🦇🚨

We've used this phylogenetic analysis pipeline in our lab for years, and grad Ben Sheppard now presents a Github release and preprint.

I run BAT analyses almost daily. It makes exploring gene families routine, customizable, and fun🧵

[Nature Reviews Microbiology @NatureRevMicro]

New online! Disentangling metabolic interactions within bacterial communities https://t.co/urbh9NHTpI

[Hao Yin @HaoYin20]

orthogene
https://t.co/iCKzzIxQDB

Map your genes of interest across >700 species
Can do many:many

bioRxiv 2026
https://t.co/6EvbMALehc

[Huiluo Cao 曹慧荦 @hlcao]

DefensePredictor: A machine learning model to discover prokaryotic immune systems | Science https://t.co/GJ06GuFZcg

[Stephen Turner 🦋 @stephenturner.us @strnr]

geneSTRUCTURE: A Modern Platform for Visualization of Gene Structures https://t.co/bJ969VXXy8 🧬💻🧪 https://t.co/5BTi3grAwo

[Joachim Schork @JoachimSchork]

Easily visualize flows in categorical data with the R package parcats. It lets you build interactive parallel category plots to explore how categories change across stages or time points. Built on plotly, fully interactive, and works well with tidy data.

Ideal for:
✔️ Longitudinal data
✔️ Survey response changes
✔️ Multi-stage classification
✔️ Categorical transitions

The visualization below shows a parcats plot created from an alluvial-style dataset in wide format. It’s taken from the package website: https://t.co/eKdlTVWbFe

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For more information, visit this link: https://t.co/ktUcWo9XpO

#datasciencetraining #DataViz #Rpackage #DataVisualization #RStats #Data #coding

[Satoshi Kawato 川戸 智 @KawatoSatoshi]

Big update for #gbdraw!
- Multi-record circular plots: Genomes with multiple replicons can now be displayed in a single view!
- Advanced linear plots: Focus on regions of interest with granular control over feature selection and color-coding!
Try now: https://t.co/ahqoRxbDHT

[Yunha Hwang @Micro_Yunha]

Protein–protein interactions (PPIs) are key to discovering and interpreting new biological functions.

We’re excited to introduce 𝑭𝒍𝒂𝒔𝒉𝑷𝑷𝑰: a new application of gLM2 that uses genomic language modeling to predict proteome-wide PPIs in microbial genomes in minutes.

[João Botelho @JoaoFTSBotelho]

📢 Our paper is now out in @ISMEJournal! 🦠

What happens when a pathogen population is genetically diverse AND under antibiotic pressure? TL;DR #AMR is a community effort!

#Pseudomonas aeruginosa

[Kevin Goeij @KevinGoeij]

A major work from our lab is out in Science! @ScienceMag, another key step towards a true demonstration of RNA self-replication. https://t.co/2Fe8XonYst (1/6)

[Ming "Tommy" Tang @tangming2005]

Scikit-bio: a fundamental Python library for biological omic data analysis https://t.co/zRqpOMzXtR

[iMeta @iMetaScience]

MicrobTiSDA: A flexible R package for inferring interspecies interactions and abundance dynamics in microbiome time-series data
https://t.co/P6Q4xouIlD

[Cameron Thrash @jcamthrash]

Bacteriophages mobilize bacterial defense systems via lateral transduction https://t.co/G3qzQFE1Lg

[Satoshi Kawato 川戸 智 @KawatoSatoshi]

Visualizing pairwise genome comparisons? No need to run BLAST separately anymore! 🧬
​#gbdraw has implemented #LOSAT, a WASM-powered Rust reimplementation of BLASTN/TBLASTX.
​✅ No local installation
✅ No data transfer (Serverless)
​Try it here: https://t.co/ahqoRxbDHT