soeding_lab @SoedingL - Twitter Profile

almost 2 years ago

@thesteinegger Wow, congratulations, Martin ! And kudos to the effectiveness and pragmatism of the people at the Korean ministry of justice.

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soeding_lab @SoedingL

almost 2 years ago

See PenguiN manuscript at https://t.co/mvYDj39NJ1

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soeding_lab @SoedingL

almost 2 years ago

Example: The number of full-length ssRNA phage genomes assembled from 82 metatranscriptomic samples from activated sludge and freshwater (Callanan, J. et al. Science Adv, 2020). PenguiN assembles ~3x more genomes (at 99% seqid filtering) than the next best assembler.

SoedingL's tweet photo. Example: The number of full-length ssRNA phage genomes assembled from 82 metatranscriptomic samples from activated sludge and freshwater (Callanan, J. et al. Science Adv, 2020). PenguiN assembles ~3x more genomes (at 99% seqid filtering) than the next best assembler. https://t.co/iGcAJi6geu

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soeding_lab @SoedingL

almost 2 years ago

PenguiN, our viral metagenomics assembler, just got accepted at BMC Microbiome! In contrast to the standard de Bruijn graphs assemblers, it uses all-vs-all alignment in linear time to merge reads. This allows it to often resolve severalfold more strains than dBG assemblers.