Tenzer Lab

Focusing on quantitative proteomics using ion mobility and data-independent acquisition techniques

[Tenzer Lab @TenzerLab]

@DemichevLab https://t.co/d2rUcyFxgc

[Tenzer Lab @TenzerLab]

New preprint out!

Timsim: a framework to simulate native #timsTOF dda-PASEF and dia-PASEF datasets with full ground-truth annotation, enabling precise benchmarking of #FDR and phosphosite localization errors in #proteomics and #immunopeptidomics workflows. (1/2)

[Tenzer Lab @TenzerLab]

Our benchmarks reveal inflated true FDR (3–5%) when modified peptidoforms are considered and highlight peak-matching errors in match-between-runs analyses.

Great collaboration with the labs of Andreas Hildebrandt and Mathias Wilhelm. (2/2)

Preprint: https://t.co/d2rUcyFxgc

[Julian Beyrle @JulianBeyrle]

Big shoutout to @TenzerLab, @DavidGomezZep, and my fantastic colleagues for their support. Learn more about MAETi and stay tuned for the upcoming preprint! (3/3) #TeamMassSpec #immunopeptidomics

[Julian Beyrle @JulianBeyrle]

The event was an incredible learning experience in #proteomics while reconnecting with old friends and making new ones in the community. Special thanks to #DGPF and @HUPO_org for supporting my journey with a travel grant. (2/3)

[Julian Beyrle @JulianBeyrle]

Thrilled to have shared our latest research on "MAETi: Mild Acid Elution in a Tip enables MS-based immunopeptidomics profiling from as low as 50,000 cells" at #HUPO2024 in Dresden! (1/3)

[Human Protein Atlas @ProteinAtlas]

A new version 24 of the Human Protein Atlas resource has been released at the HUPO meeting in Dresden, Germany. The data is summarized in eight resources covering different aspects of human protein-coding genes in tissues, cells, cell lines and blood.

https://t.co/U18BHVMXYF

[Mushtaq Bilal, PhD @MushtaqBilalPhD]

☹️Google Scholar is a great tool. But it doesn't show how papers are connected with each other.

😀Here's how to fast-track your literature review with a "visual search."

And export your papers to Zotero, Mendeley, or EndNote.

You can learn this workflow in 15 min:

[DKFZ Immunology Infection and Cancer @DKFZImmunology]

Follow this excellent tutorial if you want to improve your DDA-PASEF acquisitions with Thunder-DDA-PASEF and ensure high-coverage immunopeptidomics analyses ⬇️
Huge congrats to @TenzerLab @DavidGomezZep and co-authors for this fantastic work recently published in @NatureComms! 👏

[DKFZ @DKFZ]

Apply now for the Summer Selection of the International #PhD Program at the German Cancer Research Center, covering all areas of #cancerresearch, including #datascience, #bioinformatics, #epidemiology, #medicalphysics. To apply for your #PhDatDKFZ visit ➡️ https://t.co/QslBWkpuJV

[Tenzer Lab @TenzerLab]

Job Alert 🌟 We are recruiting a postdoc in #lcms based #immunopeptidomics in our group @HITRONMainz - position is fully funded for two years. Check the job description and apply here:
https://t.co/bPBY11OfMT
Please RT!

[Tenzer Lab @TenzerLab]

Want to learn how to optimize your #DDA-PASEF acquisition for #immunopeptidomics? Use Thunder-DDA-PASEF! See our paper by @DavidGomezZep from @HITRONMainz: https://t.co/ioN3CJVqII
Thanks to a wonderful collaboration with @compomics and @ChristineCARAP1!

[Tenzer Lab @TenzerLab]

Excellent opportunity to connect to the #immunopeptidomics community and get in touch with the latest developments!

[HUPO-HIPP @HippHupo]

Save the date! The 3rd HUPO-HIPP summer school. Université de Montréal, Canada August 14th to 16th 2024. @hupo_org #immunopeptidomics #HLA https://t.co/EJDHN13JHx

[Tenzer Lab @TenzerLab]

@Karl_Mechtler This is a critical and most likely not only theoretical issue. "Sample preparation blank/no cell" SCP samples can reveal unexpected effects.

[DKFZ @DKFZ]

Congratulations! 👏👏👏

[Tenzer Lab @TenzerLab]

@EU_YPIC Thanks for a great evening and exciting discussions!

[Tenzer Lab @TenzerLab]

@SinzAndrea @dfg_public @UniHalle @unimedizinhalle @IDPseminars @idpsig Congratulations! Well deserved!

[Andrea Sinz @SinzAndrea]

‼️To all junior professors and senior postdocs #teammassspec: if you are doing cool stuff in MS, please apply for the prestigious Mattauch-Herzog award of the German Society for MS 🔽.
Please check here:
https://t.co/Zrd2ZCsZpM

[Tenzer Lab @TenzerLab]

@L_Bunse @dgfi_org @Novartis @Platten_lab @platten_michael @UniHeidelberg @DKFZ Congratulations - well deserved!

[Tenzer Lab @TenzerLab]

@DemichevLab Looking forward to an exciting collaboration!