Interested in using #EarlGrey for your #Transposon annotation, but not sure where to start? A tutorial with in-depth video is now on #TEHub @hub_te. Make sure to check out the other fantastic resources available whilst there! https://t.co/kuQ7d4AxIP
#Bioinformatics#Genomics
… when populations arose, and we identified population-specific waves of TE activity as a significant source of variation among populations.
TE activity surged over timescales as short as 25 years(!), and we find repeated instances of TEs with adaptive signatures, including…
Excited to share the published version of our paper: Thermal Adaptation in Worldwide Collections of a Major Fungal Pathogen 🌍🔥 Congrats to @MinanaPosada and @AliceFeurtey for leading this great work! 🎉 Read it here: https://t.co/eYwreBMhVs
Dive into the massive genomes of plant pathogenic rust fungi! 🌿🍄
Our study reveals how ancestral & recent bursts of transposition have shaped these remarkable genomes.
👏 Congrats to @Emma______C on her 1st PhD paper!
🙌 @SebbyRust, Emmanuelle Morin
https://t.co/c1y7Hzwy94
We're hiring! If you're looking for a postdoc position and are interested in #fungal genomics and/or giant transposons please apply. We're hoping to find someone with experience transforming A. fumigatus.
https://t.co/XtGxP56CeU
It is out: "Analyses of transposable elements in arbuscular mycorrhizal fungi support evolutionary parallels with filamentous plant pathogens"
@Blunt_Microbe@Ken_M_Mugambi
https://t.co/EcK5O4VmdY
Warm welcome to our new #BMCGenomics Editorial Board Members @toby_baril_bio, @Gurjeet85572435 and @Nik_Palevich. We are looking forward to working with you. Interested in joining #BMCGenomics? Visit <https://t.co/l6ev0FAPln>
Big updates in Earl Grey v5!
- Create de novo TE libraries w/BEAT + skip annotation
- Annotation + defragmentation w/your own TE libraries
- Experimental: Improved Helitron detection w/HELIANO (@ZhenLi89973503)
- notes: https://t.co/U4S2oRbEKe
#Bioinformatics#Transposon#TEhub
Congratulations to @zymohyda on the first 1st author paper from his PhD. Just out in @MPMIjournal
ZymoSoups: A high-throughput forward genetics method for rapid identification of virulence genes in Zymoseptoria tr… https://t.co/uHDOrY7yCo
We just launched Circa 2.0!
Create beautiful circos plots in minutes, without a single line of code. You can try it for free with sample data now!
https://t.co/fvb12bvYTq
🚨Preprint alert🚨
Super happy to share the preprint of one of my PhD chapters in #Zymoseptoria now on BioRxiv:
“Host specialization defines the emergence of new fungal plant pathogen populations”. https://t.co/GW92N9Xq6a 🧵👇[1/8]
So, so proud of this paper! TEs in cold adapted D. montana flies https://t.co/qcPlMyDVG9. Amazing collaboration with ’Masse’ Tahami, @GonzalezLab_BCN @NooraPoikela I have been dreaming about this since 2015… 🧬❄️🧬!
Mariane P. Gomes, our visiting PhD student, presented her work on the XXIX Congresso Brasileiro de Entomologia e XIII Congresso Latino-Americano de Entomologia. A collab with Fernando Cônsoli, @rita_rebollo & @Toby_Baril_Bio . Parabéns Mariane 😍!
New Starship preprint is up🚀!https://t.co/WT4I3Esw46 We take a deep dive into the population dynamics of these giant #transposons by examining over 500 genomes of the human pathogenic #fungus Aspergillus fumigatus
Discover how we identified genes associated with host adaptation in Zymoseptoria tritici. Our genome-host association approach could be a game-changer for plant pathogen studies. Full preprint available now on @ResearchSquare: https://t.co/OVPKUtrFJE #OpenScience@AliceFeurtey