Toyoko

DIGITAL BIOLOGY
Software Products and Services for Life Sciences

[Toyoko @ToyokoLab]

New Docker available on OmicsContainers: Bakta, a modern version of Prokka
https://t.co/iKqvuugeKc
#Bioinformatics #DockerHub #DNALinux #ToyokoBio #OpenScience

[Toyoko @ToyokoLab]

Biopython 1.88  in OmicsContainers!
Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.
https://t.co/45dzu3msn2

[Toyoko @ToyokoLab]

New Docker in OmicsContainers! CheckM2: Machine Learning for More Accurate Genome Quality Assessment
https://t.co/z1kpeovlUZ #Bioinformatics #Genomics #Pangenome #Dockerhub #DNALinux #ToyokoBio #OpenScience

[Toyoko @ToyokoLab]

New docker! https://t.co/WPu9Qmdcxs
dnalinux/scrnaseq_r_workflow

[Toyoko @ToyokoLab]

PaperJev: trying JEV by filtering a week of new biology papers https://t.co/8hz43h7Qms

[Itai Yanai @ItaiYanai]

Nobel Prize winner Ada Yonath sadly passed away today. She was a legend for her pioneering work on figuring out the structure of ribosomes.

“Focus on what you love to do, what you want to know, first of all, or what you want to achieve, or what you want to do. If you want to be a performer, a dancer, it's okay with me, as long as this is really built in, and you can do it well. Courage is very important, but for science, curiosity is not enough, it should come with the courage. Really wish to understand something. If there is no wish like this, and they ask me where will I get the best salary, or I become more famous, or then I have no answer for that.”

[Toyoko @ToyokoLab]

Happy pride day 🏳️‍🌈🏳️‍⚧️🎉

[Toyoko @ToyokoLab]

New Docker available on DNALinux: SPAdes 4.2.0 https://t.co/IYMbHfWcXY

[Toyoko @ToyokoLab]

New Docker Fastp v1.3.3
https://t.co/XDDdT30zc9

[Toyoko @ToyokoLab]

fastqc 0.12.1 available on DNALinux https://t.co/PvKKv9bFVA

[Toyoko @ToyokoLab]

The new logo for DNALinux
We designed the DNALinux logo with a core belief: that biological complexity, much like the diffraction pattern in Photo 51, can be decoded through structure, abstraction, and open systems. #rosalind #openscience https://t.co/Zdj4IXZMvu

[Toyoko @ToyokoLab]

New SRA Toolkit packages available on DNALinux https://t.co/tMySddzBKC
sra-toolkit 3.4.1-bin: AMD64 only
sra-toolkit 3.2.1-deb: AMD64 and ARM64

[Toyoko @ToyokoLab]

Happy Star Wars Day!
May your pipelines be robust, your clusters never fail, and may the Fourth be with you!

[Toyoko @ToyokoLab]

New docker available: BWA 0.7.19 https://t.co/fGFnUCoeRq
Mapping low-divergent sequences against a larger reference genome
#NGS #sequencing #openscience

[Toyoko @ToyokoLab]

Our preprint is out! 🤖🧬 gffutilsAI: An AI-agent for interactive genomic feature exploration in GFF files
https://t.co/lOe6fgerrm

[bioRxiv @biorxivpreprint]

New papers posted on December 4, 2025:
5 in bioinformatics: https://t.co/dNiMwyEYbJ
7 in biophysics: https://t.co/WExV4x2xPK
3 in cancer biology: https://t.co/7DXtDVhlLd
4 in cell biology: https://t.co/vO1EPg76bW
4 in developmental biology: https://t.co/eZVOXSRa3m

[Toyoko @ToyokoLab]

🍁 Happy Thanksgiving from Toyoko! 🍁
From our small team to you and yours, thank you for being part of our journey.
We’re grateful for the partners, collaborators, and supporters who believe in what we are building.

[Toyoko @ToyokoLab]

Men have their darkness and their contradictions—some of them very notorious, like Watson's. Nevertheless, we must remember him as one of the architects behind the discovery of one of the most beautiful things in science: the structure of DNA. Farewell, James Watson!

[Toyoko @ToyokoLab]

Happy Halloween 🎃 Tonina is coming ...

[The Nobel Prize @NobelPrize]

BREAKING NEWS
The 2025 #NobelPrize in Physiology or Medicine has been awarded to Mary E. Brunkow, Fred Ramsdell and Shimon Sakaguchi “for their discoveries concerning peripheral immune tolerance.”

[Toyoko @ToyokoLab]

Heartbroken to say goodbye to Dr. Jane Goodall. Her courage, kindness, and lifelong fight for our planet inspired us, and millions around the world. Her hope lives on in us. 🌍🐒💚 #JaneGoodall #ClimateEmergency