ViromeLab

[Diogo Pratas @DgPratas]

Need to identify viruses in ancient sequenced samples? You may want to try FALCON2 💻🦠🧬👨‍🔬👩‍🔬

https://t.co/bGuADRh0Gc

https://t.co/bqijMR58eR

#Bioinformatics #aDNA #viruses #metagenomics

[Diogo Pratas @DgPratas]

New in GigaScience: “An evaluation of computational methods for reconstruction of human viral DNA genomes” 🎉 💻 🦠 Congratz!

DOI: https://t.co/TpZicASLsJ

#bioinformatics #virology

[Diogo Pratas @DgPratas]

JARVIS3: an efficient encoder for genomic data

https://t.co/MZOu1j4X3S

#Bioinformatics #DataCompression

[Diogo Pratas @DgPratas]

𝗔𝗹𝘁𝗮𝗶𝗥: 𝗮 𝗖 𝘁𝗼𝗼𝗹𝗸𝗶𝘁 𝗳𝗼𝗿 𝗮𝗹𝗶𝗴𝗻𝗺𝗲𝗻𝘁-𝗳𝗿𝗲𝗲 𝗮𝗻𝗱 𝘁𝗲𝗺𝗽𝗼𝗿𝗮𝗹 𝗮𝗻𝗮𝗹𝘆𝘀𝗶𝘀 𝗼𝗳 𝗺𝘂𝗹𝘁𝗶-𝗙𝗔𝗦𝗧𝗔 𝗱𝗮𝘁𝗮

https://t.co/t0koPzW03m

@MiguelFSilva1 @GigaScience #Bioinformatics #opensource

[Diogo Pratas @DgPratas]

Machine Learning-Driven Discovery and Database of Cyanobacteria Bioactive Compounds: A Resource for Therapeutics and Bioremediation

https://t.co/CjuyfH1fHB

#Cyanobacteria #Bioremediation #MachineLearning

[Diogo Pratas @DgPratas]

𝙄𝙣𝙩𝙧𝙖-𝙝𝙤𝙨𝙩 𝙜𝙚𝙣𝙤𝙢𝙞𝙘 𝙙𝙞𝙫𝙚𝙧𝙨𝙞𝙩𝙮 𝙖𝙣𝙙 𝙞𝙣𝙩𝙚𝙜𝙧𝙖𝙩𝙞𝙤𝙣 𝙡𝙖𝙣𝙙𝙨𝙘𝙖𝙥𝙚 𝙤𝙛 𝙝𝙪𝙢𝙖𝙣 𝙩𝙞𝙨𝙨𝙪𝙚-𝙧𝙚𝙨𝙞𝙙𝙚𝙣𝙩 𝘿𝙉𝘼 𝙫𝙞𝙧𝙤𝙢𝙚 https://t.co/ee7AsgIMhU 🙏😃🥂
@lpyori @MariToppinen @Simmonds_Lab @Espoonklaussi @SajantilaAntti @MaFePerdomoC

[Diogo Pratas @DgPratas]

🚨 New study alert! 🚨 Insights on inherited chromosomally integrated HHV-6B in liver transplants. Essential read for transplant professionals! 🧬🦠

🔗 https://t.co/2lENSlxKFo

#Transplantation #Virology #HHV6 #MedicalResearch #HealthcareSecurity

[GigaScience @GigaScience]

New from @DgPratas @MiguelFSilva1 et al helping address the challenges of automatically modeling and distinguishing LCRs.

AlcoR: alignment-free simulation, mapping, and visualization of low-complexity regions in biological data https://t.co/t1p56eHtlw

[Miguel F. Silva @MiguelFSilva1]

AlcoR just got published! Discover our new tool for analyzing low-complexity regions in genomes and proteomes.
https://t.co/d5rKG8J0KH
https://t.co/BNqLKj2Bl5

@GigaScience #Bioinformatics #Genomics

[Diogo Pratas @DgPratas]

Please, check our latest article at @GigaScience

https://t.co/MnLKgUJ9p3

#OpenScience #Bioinformatics

[Riva @rivatez]

New study maps prevalence of persistent viral DNA in organ tissue

"Researchers believe these persistent viruses can influence the development of chronic diseases such as cancer or autoimmune diseases"

This graphic is wild
https://t.co/yrMg7MPw6P

[Diogo Pratas @DgPratas]

We are pleased to present AlcoR: a toolkit for #Simulation , #mapping , #masking & #visualization of low #complexity regions in #biological data 🤩

https://t.co/slq03Onier
https://t.co/0pa85fF2hy

#Bioinformatics #OpenScience #OpenSource
#Software #coding #C #DataCompression

[Virus infections and immunity @awesome_viruses]

Persistent childhood viruses are found in adult tissues, including internal organs, indicating the existence of a unique microbiome in our organs- the virome. https://t.co/6Yn3OsMk8z
#microbiome
#virome
@lpyori @DgPratas @MariToppinen @Espoonklaussi @SajantilaAntti @MaFePerdomoC

[Maria Fernanda Perdomo @MaFePerdomoC]

A world of hidden viruses within us.
Super proud of you @lpyori
Check it out at https://t.co/x1Y7XBbrUd

[Virus infections and immunity @awesome_viruses]

The largest study to date on the viruses residing within our tissues
Unmasking the tissue-resident eukaryotic DNA virome in humans https://t.co/AHFwabcwFK

[Saja Lab @lab_saja]

Together with @awesome_viruses this awesome paper is finally published @NAR_Open . Do check what viruses reside within our tissues!

[Diogo Pratas @DgPratas]

Please, check our latest article at @NAR_Open

Unmasking the tissue-resident eukaryotic DNA virome in humans

https://t.co/TMFv1yKvCz

#Bioinformatics
#Human
#Virome
#DNA

[Diogo Pratas @DgPratas]

What are the implications of finding Human Papillomavirus type 31 sequences in bone marrow samples? Is it connected to some types of leukemia?

https://t.co/7oHKMElWhX

#Bioinformatics
#Leucemia

[Diogo Pratas @DgPratas]

Please, check out our latest article: 𝗗𝗲𝘁𝗲𝗰𝘁𝗶𝗼𝗻 𝗼𝗳 𝗟𝗼𝘄-𝗖𝗼𝗽𝘆 𝗛𝘂𝗺𝗮𝗻 𝗩𝗶𝗿𝘂𝘀 𝗗𝗡𝗔 𝘂𝗽𝗼𝗻 𝗣𝗿𝗼𝗹𝗼𝗻𝗴𝗲𝗱 𝗙𝗼𝗿𝗺𝗮𝗹𝗶𝗻 𝗙𝗶𝘅𝗮𝘁𝗶𝗼𝗻 🧬🧪👩‍🔬

https://t.co/qmT4YyT95R

Congrats to all!

#virus
#Bioinformatics
#viral

[Diogo Pratas @DgPratas]

TRACESPipe is out at @GigaScience
Really Grateful and proud for all.

A hybrid pipeline for reconstruction and analysis of viral genomes at multi-organ level

https://t.co/KDby2fSc93

@MaFePerdomoC @MariToppinen @lpyori @awesome_viruses #Bioinformatics #virology