Quantitative Biology Papers

New Quantitative Biology papers from Thank you to arXiv for use of its open access interoperability.

[Quantitative Biology Papers @WCBO]

Building Barricades: Red-Teaming Agentic Biosynthesis Planning

Nicholas Roehner, Bryan Bartley, Jacob Beal, Caitlin Jagla, Troy Timmerman, Kemper Talley
https://t.co/MAkMYe12uZ [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

The Kinetic Basis of the Genetic Code

Hemachander Subramanian
https://t.co/faPWgl2tOw [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Mathematical modeling to study combination strategies for neural stem cell therapy in glioblastoma

Ashley Harrison, Austin Hansen, Anthony E. Bishay, Greg Grigoryan, Vikram Adhikarla, Russell C. Rockne, Margarita Gutova, Heyrim Cho
https://t.co/Lh37LPxvNW [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Comparison of anomaly detection and supervised learning for acute myeloid leukemia blast identification: A proof-of-concept study

Mezya Sezen, Pavinap Priyaa, Krishnapriya Vinod, Atul Thatai, Nitin Dayal, Ragothaman M. Yennamalli, …
https://t.co/Wx979r510x [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Model-Based Cortisol Replacement Strategies for Patients With Adrenal Insufficiency

Nayana Saha, Renuka Joshi, Vittal Srinivasan, Stanislaw H. Zak, Cary N. Mariash
https://t.co/lUxgHsieaN [𝚚-𝚋𝚒𝚘.𝙾𝚃 𝚎𝚎𝚜𝚜.𝚂𝚈]

[Quantitative Biology Papers @WCBO]

A mechanistic interpretation of mutation risk across biological scales

Satavisha De, B Vibishan
https://t.co/VSX6jgSZrp [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

2D reaction-diffusion model-based biopsy simulation for dynamic tumor growth parameter estimation

Veronika Hofmann, Pirmin Schlicke, Jan Zawallich, Heiko Enderling, Christina Kuttler
https://t.co/b4uZPQE92P [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Flash-Radiomics: A Scalable Hybrid CPU-CUDA Engine for Standardized Scalar Radiomics and Accelerated Spatial Mapping

Shanli Ding, Yiyi Hu, Ziyu Fu, Chia-Hsin Lin, Ruihan Luo, …
https://t.co/vgC4rLCe2Z [𝚚-𝚋𝚒𝚘.𝙾𝚃 𝚌𝚜.𝙼𝚂 𝚎𝚎𝚜𝚜.𝙸𝚅 𝚙𝚑𝚢𝚜𝚒𝚌𝚜.𝚖𝚎𝚍-𝚙𝚑]

[Quantitative Biology Papers @WCBO]

SenSASP: A Unified, Multi-Layer Database of Senescence and SASP Genes

Hao Xuan, Yu Huang, Jiang Bian
https://t.co/qOhdNxtsbY [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Making Models That Matter: How to Build Trustworthy and Useful Systems Biology Models

John M. Hancock, Mihail Anton, Frank T. Bergmann, Irina Balaur, Carissa Bleker, Thomas C. Collin, Oscar Dias, Elena Dominguez-Romero, Chris Evelo, …
https://t.co/62ZcsSXKcg [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

MarkerScout: A Disease-Agnostic Machine Learning Framework for Biomarker Prediction from Multi-Scale Mechanistic Models

Robert Moore, Frank Agayie-Ntim, Lindsey B. Crawford, M. Jana Broadhurst, David M. Brett-Major, Prakash Packrisamy, …
https://t.co/3gJKqgxZfe [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Enhancing Clinical Decision Support and Differential Diagnosis with Knowledge Graphs, and Retrieval Augmented Generation in Generative AI

Henri Feto, Abicumaran Uthamacumaran, Hector Zenil
https://t.co/D3CaE55PFx [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Geochemical Hazard Assessment of Martian Regolith for Future Human Exploration

Mavia Anjum, Gwendolyn D. Bart
https://t.co/0u5vg5PfJX [𝚚-𝚋𝚒𝚘.𝙾𝚃 𝚊𝚜𝚝𝚛𝚘-𝚙𝚑.𝙴𝙿 𝚊𝚜𝚝𝚛𝚘-𝚙𝚑.𝙸𝙼]

[Quantitative Biology Papers @WCBO]

Expanding the Human Ancestry Ontology to include under-represented populations and ethnicities for broader utility in annotations

Anita Caron, Melek Chaouch, Zoë May Pendlington, Helen Parkinson, …
https://t.co/C2INUcicvY [𝚚-𝚋𝚒𝚘.𝙾𝚃]
💬Submitted to Cell Press Patterns

[Quantitative Biology Papers @WCBO]

Conservative deterministic Markov models in mathematical biology: uniqueness of steady states, reversibility and computational methods

Joseph G. Shuttleworth, Simon P. Preston Chon Lok Lei, Etienne Farcot, Gary R. Mirams
https://t.co/1nEFt1rW6k [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Beyond chlorophyll: machine learning estimates of diagnostic phytoplankton pigments from multispectral ocean colour data

David Moffat, Angus Laurenson, …
https://t.co/Y1sa86v6eA [𝚚-𝚋𝚒𝚘.𝙾𝚃 𝚌𝚜.𝙻𝙶 𝚙𝚑𝚢𝚜𝚒𝚌𝚜.𝚘𝚙𝚝𝚒𝚌𝚜]
💬Submitted to Frontiers of Marine Science

[Quantitative Biology Papers @WCBO]

Phil Bourne (1953-2026): From Small Molecules to Big Data — The Journey of a Multifaceted Visionary

Andreas Prlić, Cameron Mura
https://t.co/4VyITfNc0R [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Mutual-Information-Dependent Nonlinear Threshold Response Model Linked to the Free Energy Principle

Tatsuaki Tsuruyama
https://t.co/nwjeHVIOwz [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Orientation Reading by Production Vision-Language Models on Optotype Charts: A Controlled Multi-Model Evaluation Across Reasoning Modes, Prompts, and Access Modalities

Shahryar Wasif, Avneek Sandhu, Bin Hu
https://t.co/kVJb9VrIXC [𝚚-𝚋𝚒𝚘.𝙾𝚃]

[Quantitative Biology Papers @WCBO]

Estimating Time-Dependent COVID-19 Parameters Using Kolmogorov-Arnold Network and Fourier Series

Arief Anbiya
https://t.co/6XJxtJw0dS [𝚚-𝚋𝚒𝚘.𝙾𝚃]