Zeqian Li

Principal Bioinformatics Scientist @BillionToOneInc. Formerly graduate student @SeppeKuehnLab

[Zeqian Li @ZeqianL]

@trashh_dev Hey I'm interested. Can't DM because of verification.

[Stephen Turner 🦋 @stephenturner.us @strnr]

Terminal Genome Viewer (tgv), written in Rust https://t.co/IJDBqud8sG

[Zeqian Li @ZeqianL]

@tangming2005 Thanks for sharing it! For anyone curious, tgv is a hobby project and is at a very, very early stage, so expect bugs. Please don't rely on it for your papers (yet) :)

Contibution and bug reports are welcome!

[Orhun Parmaksız 👾 @orhundev]

Finally, I can make sure I'm a human, not a rat!

🧬 tgv: Terminal Genome Viewer

🔍 Explore human genomes in the terminal.

🚀 Supports multiple formats, Vim motions & more!

🦀 Written in Rust & built with @ratatui_rs

⭐ GitHub: https://t.co/MWwcVC5qgg

#rustlang #ratatui #tui #genome #viewer #explorer #terminal #commandline

[Zeqian Li @ZeqianL]

I built a genome viewer in the terminal! Light, blazing fast 🚀, vim-motion, written in #rust https://t.co/sXvSTyaiKq

I'm also looking for open contributions! There is so much I wanna build. The goal is to make TGV as powerful as IGV one day.

#Bioinformatics

[Zeqian Li @ZeqianL]

Feel free to reach out with questions!

[Zeqian Li @ZeqianL]

I'm hiring for a graduate-level computational biology intern! In this 10-week program, you would work with a brilliant team and explore cutting-edge cancer research with NGS data.

Undergraduates with research experience are welcome!

https://t.co/9cLpAur50K

[Zeqian Li @ZeqianL]

I look forward to future efforts in microbial phenotyping and statistical methods in studying microbes and microbial communities! Also see @SeppeKuehnLab 's thread for a paper summary https://t.co/rlKXeiSM6t

[Zeqian Li @ZeqianL]

I'm super excited to share that my PhD paper is now published in @PLOSCompBiol ! This achievement wouldn't have been possible without @SeppeKuehnLab 's guidance, Ahmed Selim's exceptional pilot work, and insightful discussions with mentors and peers. 1/n

https://t.co/h4XFMkjXHk

[Zeqian Li @ZeqianL]

I'm so proud of the tremendous effort poured into the paper, leading to a seamless peer-review process (including this reviewer comment: "It is quite a rare case that I am not making any suggestions to improve the paper. It is quite a polished manuscript ready for publication.")

[Zeqian Li @ZeqianL]

I’m thrilled to announce my next journey after graduate school: Senior Bioinformatics Scientist at @BillionToOneInc ! I look forward to working with the amazing oncology team to drive innovation in the next generation of cancer diagnosis.

[Zeqian Li @ZeqianL]

@martinadalbello @yale_eeb @YaleWestCampus @Yale Congratulations!

[Zeqian Li @ZeqianL]

@reillycoopersci Thank you man!

[Zeqian Li @ZeqianL]

So excited to see this work out! We delved into the challenge of predicting complex traits from genomes. Inspired by @KarnaVGowda's success in denitrification, we approached the problem statistically. We found success early on, but the story went way deeper than we thought. A 🧵:

[Zeqian Li @ZeqianL]

Kyle's paper is out! @kcrocker_qbio and @KarnaVGowda connect global patterns in the soil to lab experiments. I made a contribution: using a comparative study of gene co-evolution in a large genome collection, I showed the same pattern in a third context: the full tree of life.

[Zeqian Li @ZeqianL]

Chandana's paper is out! So happy to be a part of this. 100,000 is not a number you see often in these datasets.

[Zeqian Li @ZeqianL]

Mine on Wednesday morning!