Zeynep Koşaloğlu-Yalçın

Instructor Cancer Bioinformatics @ljiresearch | @NCT_HD @UniHeidelberg & @DKFZ alumni

[Cancer Epitope Database & Analysis Resource @CEDAR_epitopes]

We are excited to announce that our paper "Cancer epitope prediction tools and analysis pipelines in CEDAR" is now published in the Nucleic Acids Research (NAR) Web Server issue! https://t.co/nKWERayqQy

#Immunology #ImmunoOncology #CancerResearch #Bioinformatics

[Immune Epitope Database @iedb_]

Dr. @ZeynepK_Y next described the published prostate cancer and neoepitope meta-analyses that were generated using @CEDAR_epitopes data. @ZeynepK_Y has pioneered CEDAR progress and the neoepitope meta-analysis. Read the newly published paper https://t.co/jQU6swGc3k #iedbuw2025

[Immune Epitope Database @iedb_]

Dr. @ZeynepK_Y next presented how to access the CEDAR data through database queries and exports (https://t.co/YnUEI8slcK), using real case studies. If you haven't already, we recommend testing out the database and building your own query!
@CEDAR_epitopes #iedbuw2025

[Immune Epitope Database @iedb_]

The third and final day of the 2025 IEDB User Workshop has kicked off! Today we discuss specialized resources, the first being @CEDAR_epitopes! @SetteLab provided a brief overview, followed by Dr. Matthew Busse, Senior Curator, who discussed the CEDAR curation process #iedbuw2025

[Cancer Epitope Database & Analysis Resource @CEDAR_epitopes]

Our new paper is out in Cancer Immunology, Immunotherapy! We present the first large-scale systematic analysis of experimentally validated neo-epitopes, integrating 16,000+ peptides from 20,000+ T cell assays curated in CEDAR.@ZeynepK_Y @SetteLab @bpeters https://t.co/sWJBeb3k0Y

[Zeynep Koşaloğlu-Yalçın @ZeynepK_Y]

There’s still time to register. We start in one hour!

[Cancer Epitope Database & Analysis Resource @CEDAR_epitopes]

Register for Empowering Cancer Immunology Research with CEDAR: A Virtual Short Course! Join us for the free Zoom Webinar on July 16 from 9am to 12pm Pacific Time, covering the fundamentals of the CEDAR database, tools, and other research topics. https://t.co/mIqFa6hkUG

[Zeynep Koşaloğlu-Yalçın @ZeynepK_Y]

Join our free virtual short course on July 16 to learn how to use the CEDAR database and next-generation tools for cancer immunology research!
Speakers include @SetteLab @bpeters
https://t.co/J77oF6SKaE

[Cancer Epitope Database & Analysis Resource @CEDAR_epitopes]

Register for Empowering Cancer Immunology Research with CEDAR: A Virtual Short Course! Join us for the free Zoom Webinar on July 16 from 9am to 12pm Pacific Time, covering the fundamentals of the CEDAR database, tools, and other research topics. https://t.co/mIqFa6hkUG

[Zeynep Koşaloğlu-Yalçın @ZeynepK_Y]

Let’s connect at #AACR25

[Cancer Epitope Database & Analysis Resource @CEDAR_epitopes]

Looking for immunological data and computational tools for your next breakthrough in cancer research? Swing by the CEDAR booth #3708 at #AACR2025!

Explore the largest cancer antigen database, learn to use powerful epitope prediction and analysis tools, and connect with the team.

[AACR @AACR]

The inaugural AACR IO Conference on Discovery and Innovation in Cancer Immunology opens this evening in Los Angeles with educational sessions followed by keynote addresses from James P. Allison and Arlene H. Sharpe.
#AACRIO25

[Immune Epitope Database @iedb_]

The IEDB Virtual User Workshop has kicked off for 2024! @SetteLab first presented a database overview, followed by @bpeters, who presented an overview of the tools (learn more on day 2). What have you learned so far? #iedbuw2024

[Zeynep Koşaloğlu-Yalçın @ZeynepK_Y]

@XShirleyLiu I would love to attend your talk, but I couldn't find it in the program. Could you please share the details of when you are presenting?

[Human Immunology News @humanimmunenews]

Drs. Stephen Schoenberger, Bjoern Peters, and team reveal an efficient approach to systematically validate clinically actionable #neoantigens and the T cell receptors that recognize them. @ljiresearch

💬 More in @ScienceTM.
https://t.co/Ng6JtpZwpV

[Science Translational Medicine @ScienceTM]

A #neoantigen discovery pipeline combines whole-exome sequencing with blood cell stimulation to identify and validate promising neoantigens—offering a less tedious and more accessible method to uncover new targets for cancer #immunotherapy. @ljiresearch https://t.co/SYnBQiemvX

[Eric Topol @EricTopol]

Advocating "personalized immunotherapy" for cancer, by showing that patients with multiple types of cancer
—have unique neoantigens that can be identified
—all individuals mount an immune, T-cell response
—but it can be bolstered
https://t.co/MSXD8NZ73i @ScienceTM @ljiresearch

[Waggoner Lab @LabWaggoner]

An HLA-agnostic platform identifies neoantigen-specific T cells in the peripheral blood of patients across a variety of cancer types @ScienceTM @SPSchoenberger @BjoernPeters2 @ZeynepK_Y
https://t.co/Y0nl8rvoYr

[Zeynep Koşaloğlu-Yalçın @ZeynepK_Y]

In our latest study published in Science Translational Medicine we combined our bioinformatics pipeline with experimental testing and revealed that patients with different cancers have preexisting immunity against #neoantigens. #Immunotherapy
https://t.co/wPGo9CHWba

[Immune Epitope Database @iedb_]

Did you know that the IEDB has a sibling resource called the Cancer Epitope Database & Analysis Resource (https://t.co/H1bKFZmMSX)? Dr. @ZeynepK_Y next talks us through CEDAR, which is funded by the NCI & leverages almost 2 decades of experience from the IEDB team! #iedbuw2023

[Immune Epitope Database @iedb_]

The recordings to the 2021 IEDB User Workshop #iedbuw2021 are now available on our YouTube channel: https://t.co/O2yJvIsSDb

[Immune Epitope Database @iedb_]

All presentations from the 2021 IEDB User Workshop #iedbuw2021 have also been saved to the IEDB Solutions Center, and you are able to download them: https://t.co/kiTfZW4ryl

[Immune Epitope Database @iedb_]

Dr. Zeynep Koşaloğlu-Yalçın is presenting our new project, the Cancer Epitope Database and Analysis Resource. CEDAR will be an extension of the IEDB and will contain cancer-related epitope data and tools! #iedbuw2021 #CancerResearch @ZeynepK_Y