Alexandre Cormier

PhD in Bioinformatics @Ifremer_fr. #Genome_assembly #Genome_annotation #Altasea

[Sina Majidian @SinaMajidian]

FastOMA is out now in Nature Methods 🎉: https://t.co/6nNVfbCVqr A new orthology inference algorithm that scales linearly and is highly accurate. FastOMA can process all >2000 eukaryotic UniProt ref proteomes <24 hours 🚀. Try it out at https://t.co/QUPiRx33J9

[Alexandre Cormier @AllanSSX]

Out today in BMC bioinformatics, our pipeline for identification of kinases into annotated genomes

Work by @ElisabethHellec, Flavia Nunes and Charlotte Corporeau

https://t.co/2Z55WmYwDh

[SFBI @SfbiFr]

La #SFBI a subventionné et a participé activement aux workshops metabarcoding / assemblage et annotation de génomes ainsi qu’aux conférences grand public en #bioinformatique en #guadeloupe cet été du 1er au 12 juillet à l’Université des Antilles 👨‍🎓

[Elisabeth Hellec @ElisabethHellec]

Il arrive... 📽️👀
Le #BioStream (live de #bioinformatique) débarque en 2024 !

📝Au programme: des présentations de projets, de sujet de recherche, de parcours de #bioinformaticiens, et bien d'autres ! 🧬

⏩ @JeBiF @SfbiFr @jobim2024 #jobim2024 #jobim

[Javier Santoyo @jsantoyo]

Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples. #16S #rRNA @PacBio #HiFi #Sequencing
https://t.co/Hdo3xYdkEo

[Ryan Wick @rrwick]

Is @nanopore duplex basecalling beneficial for bacterial genome assembly? I did some tests, and it seems like it might be!

New blog post here:
https://t.co/4nUVbhgQZy

[JBrowse @usejbrowse]

We just released JBrowse v2.11.0 with new feature "Color by CDS" to help see which translation frame is used in the gene glyphs, and new Hi-C "color schemes" and log-transformed display https://t.co/hzUjgIXGUj

[ATLASea has migrated to BlueSky @PEPR_ATLASea]

#JobOpportunity #ATLASea #HIRINGNOW
#DevOps_Engineer position is available at the @GenOuest platform, a member of the @IFB_Bioinfo , within the @irisa_lab computer science research laboratory in Rennes.
More info & application 👉 https://t.co/9zPtGv3TAP
Deadline: 17 April 2024

[Wei Shen @shenwei356]

We just published a short paper on @iMetaScience to introduce SeqKit's new functionality, performance optimizations, and improved user-friendliness, since the initial publication 7 years ago. https://t.co/myxUgZ5x3P

[ATLASea has migrated to BlueSky @PEPR_ATLASea]

Discover #ATLASea, a #France2030 research programme to build an atlas of marine genomes. First step, sampling marines species #DIVEsea, then sequencing their genomes #SEQsea and managing all the data #BYTEsea.

EN : https://t.co/ZbVtO66r09
FR : https://t.co/0jhCow2Mp1

[Nature Biotechnology @NatureBiotech]

Quality assessment of gene repertoire annotations with OMArk https://t.co/ykp3bddMWc

[ATLASea has migrated to BlueSky @PEPR_ATLASea]

#JobOpportunity #ATLASea #HIRINGNOW
6 new positions for: 1 researcher, 4 research engineers and 1 technician to integrate WHEEL-Sea 📢���, SEQ-Sea 🧬👩‍🔬👨‍🔬 and BYTE-Sea 💻 targeted project, are now available!
More details 👉 https://t.co/Bh0Xr087zq

[Christoph Hahn @C__Hahn]

https://t.co/rgtNhhRvjQ

[Lara Urban @LaraUrban42]

Air monitoring by @nanopore sequencing! Led by Tim&Sofya, our @biorxivpreprint https://t.co/4OlAyshWGF shows that we can robustly profile air microbiomes using R10 shotgun sequencing & build/annotate de novo assemblies @ISGLOBALorg @JPSchnitzler @COMI_HMGU; follow-up study soon!

[JBrowse @usejbrowse]

JBrowse v2.10.0 released, featuring a new file format called PIF ("pairwise indexed mapping format") that allows for indexed access to PAF files! Release notes here https://t.co/eFhHmEAtxn

[JBrowse @usejbrowse]

JBrowse v2.8.0 released with a new feature for rendering SVs with arcs for VCF and BEDPE files. See release notes https://t.co/lXCQPcySWG

[ATLASea has migrated to BlueSky @PEPR_ATLASea]

#JobOpportunity ATLASea #Hiring
3 open positions are part of the BYTE-Sea project, which will develop @PEPR_ATLASea IT infrastructure and the tools for processing and analyzing the data made available to the international community
👉https://t.co/Bh0Xr087zq
Deadline: 25 October

[Robert A. Petit III, PhD @rpetit3]

🔥 Bactopia v3 is here! 🔥

The @nextflowio pipeline for bacterial genomes is now faster, packed with more tools, updated docs, and much much more!

Get started at: https://t.co/NgRTKuKqeJ

#bioinformatics #genomics

[ATLASea has migrated to BlueSky @PEPR_ATLASea]

We are pleased to share the link to the https://t.co/iKdh2haX1U brand-new website! The ATLASea programme will sequence the #genomes of 4,500 species along the French coastline, and analyse this trove of genomic data to better understand its #biodiversity.

[Jennifer Leonard @JenBiologist]

Good sampling with #vouchers and high quality #metadata support high quality reference #genomes that will catapult biodiversity studies to the next level
@erga_biodiv @consevol @SevinOmics @ebdonana https://t.co/SLBCTjkXIh