The Assemblathon

I tweet about genome assembly and related topics. If something happens in the world of genome assembly and I don’t tweet about it…then it didn’t really happen.

[The Assemblathon @assemblathon]

Validation of reference-assisted assembly using existing and novel Heliothine genomes - ScienceDirect https://t.co/92Uh57PJnS

[The Assemblathon @assemblathon]

CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes https://t.co/x0F70FTKGE

[The Assemblathon @assemblathon]

Benchmarking and Assessment of Eight De Novo Genome Assemblers on Viral Next-Generation Sequencing Data, Including the SARS-CoV-2 | OMICS: A Journal of Integrative Biology https://t.co/Z7T0ykAVnI

[The Assemblathon @assemblathon]

Learning to Untangle Genome Assembly with Graph Convolutional Networks https://t.co/DtDpgbPq2V

[The Assemblathon @assemblathon]

Learning to Untangle Genome Assembly with Graph Convolutional Networks https://t.co/DtDpgbPq2V

[Nicolás Nahuel Moreyra @NicoMoreyra]

Does anyone have recommendations on programs for genome alignment and synteny analysis? #pacbio #genomealignment #synteny #assembly #genomeassembly @assemblathon

[The Assemblathon @assemblathon]

HGGA: hierarchical guided genome assembler - BMC Bioinformatics https://t.co/JdrgWzYuP3

[The Assemblathon @assemblathon]

Benchmarking of long-read sequencing, assemblers and polishers for yeast genome https://t.co/VrDB1a6Iyl

[The Assemblathon @assemblathon]

slag: A program for seeded local assembly of genes in complex genomes https://t.co/4MVHoMHTVB

[The Assemblathon @assemblathon]

Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation - Nature Methods https://t.co/rzgbzd1z7D

[The Assemblathon @assemblathon]

NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology https://t.co/AGRxJqmMPM

[Michael Schatz @mike_schatz]

So proud and excited for our #T2T work on "A complete reference genome improves analysis of human genetic variation"! Im enormously grateful to the whole team for their tireless work and support @JHU_BDPs @JHUCompSci @HopkinsCMDB https://t.co/SVSVsRESeA

[Keith Robison @OmicsOmicsBlog]

The End of the Beginning of Human Genome Sequencing? Quick thoughts on today's #T2T publishing barrage https://t.co/XQ5Lpo9CB5

[Alyssa Phillips @Plant_Phillips]

Happy to share this happy accident and collaboration we've been working on for the last two years!

In summary: We accidentally assembled a Poa pratensis reference genome.

https://t.co/Ou5up8rOP4

[The Assemblathon @assemblathon]

Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads - Nature Biotechnology https://t.co/631IGifolk

[The Assemblathon @assemblathon]

High-quality Arabidopsis thaliana Genome Assembly with Nanopore and HiFi Long Reads https://t.co/INdl5Q004Z

[The Assemblathon @assemblathon]

A simple guide to de novo transcriptome assembly and annotation https://t.co/S0RAImj2Bw

[The Assemblathon @assemblathon]

De Novo Assembly of Linked Reads Using Supernova 2.0 https://t.co/MyjdNVG8gJ

[The Assemblathon @assemblathon]

Graph theoretical Strategies in De Novo Assembling https://t.co/17C76Fkz0y

[The Assemblathon @assemblathon]

ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs - Abstract - Europe PMC https://t.co/5TdZhdNOVa