5️⃣ You confirmed your molecule — now test it in biology.
Time for in vitro testing to see how it behaves in cells.
Does it kill them? Protect them? Interact with a target?
Here’s what to do:
📌 Step 1: Choose The Right Cell Line
→ You’ll need cells that are relevant to your molecule’s goal. These are called immortalized cell lines, and you can buy them from trusted suppliers:
ATCC 🔹 https://t.co/7u1vmlxIdt
DSMZ 🔹 https://t.co/ZmvWWBIDE6
→ Relevant to your target:
Cancer 🔹 HeLa(Cervical), MCF-7(breast), A549(lung)
Liver function / Toxicity 🔹 HepG2
Brain / Neurons 🔹 SH-SY5Y
Immune System 🔹 Jurkat (T Cells)
📌 Step 2: Expose Cells To Different Concentrations
→ Create a dose–response curve
→ Prepare serial dilutions (0.1 µM, 1 µM, 10 µM, 100 µM…)
→ Seed cells into a 96-well plate
→ Add your molecule to the wells in different concetration
→ Incubate the plate usually 24-72 hours in CO₂ incubator
Alternatives for CO₂ incubator(because it‘s expensive):
DIY-CO₂-Incubator ~200–500 $ or
Choose cell lines that don‘t require CO₂ and
Keep cells at 37°C in a basic incubator or heated box
⚠️ Note: Not all cell lines grow equally well in these media ⚠️ Check the datasheet or literature
⚠️ ATCC - https://t.co/hZbmxmyhXj Each cell line page includes a „Culture Conditions“ section.
⚠️ Example: SW480 (at ATCC)
→ Grown at 37°C without CO₂, using Leibovitz’s L-15 medium.
📌 Step 3: Run Standard Assays:
• Viability: MTT, resazurin
→ how many cells are still alive
• Membrane damage: LDH release
→ dead cells leak LDH - measures cell damage
• Apoptosis/necrosis: Annexin V / PI staining
→ shows programmed cell death
• Oxidative stress: ROS assays
→ measures reactive oxygen species
• Reporter genes: pathway activation
→ shows if a cellular pathway is triggered
📌 Step 4: Analyze The Data
→ Calculate IC₅₀ - Identify toxic vs. safe ranges
→ See how your molecule acts in a living system (well, living cells)
→ Dose-response curve: Effect vs. Concentration (Michaelis-Menten Analysis)
⚠️ Doesn‘t worked well?
⚠️ Repeat🤣
#InVitro #CellBiology #Toxicology #MTT #DrugDiscovery #LabWork #MolecularTesting
Most people stop at drawing molecules.
But you?
You want to build one — and test it.
This thread is your complete guide to turning a structure into a real, tested compound.
From SMILES to synthesis. From cells to answers.
Let’s go.
#DrugDiscovery#ScienceTwitter#InVitro
4️⃣ You made your molecule — now prove it.
How do you know it’s really what you designed?
Here’s how to confirm your compound’s identity with chemistry’s most powerful tools:
📌 NMR – Nuclear Magnetic Resonance ($50-120)
→ Reveals how H and C atoms are connected
→ Confirms structure & functional groups
📌 MS – Mass Spectrometry ($50-150)
→ Exact molecular weight
→ Sees fragments of your molecule
📌 IR – Infrared Spectroscopy ($20-60)
→ Confirms OH, COOH, C=O, and more
Where do you do this?
🏛️ University lab
🧪 Companies (Eurofin, Sigma-Aldrich, Intertek)
You can send your sample to certified analytical chemistry lab, for example:
Eurofins 🔹 https://t.co/tcQ0LL9AgN
AlsaChem 🔹 https://t.co/bAV8I7b8zE
Intertek 🔹 https://t.co/nqlYIf2GlT
Sigma-Aldrich Analytical Services 🔹 https://t.co/yuco21KK9V
Result?
Spectra + interpretation = structural proof
Now you’re ready for bio testing!
⚠️ → Part 5: Let‘s test in biology!
#AnalyticalChemistry #NMR #MassSpec #Infrared #DrugDevelopment #MoleculeMadeReal
5.) Many different signalling pathways can cause - or fail to suppress - cell proliferation.
But what we learned from the case of mutant EGFR is that it might be possible to treat certain cancers if we can disrupt the right signalling pathways.
A generic #cellular#signalling#pathway with kinase.
Kinases phosphorylate - that‘s what they do.
Phosphorylation performs a function a bit like turning a switch on or off. In this way, a cascade of signals is created.
One such process is cell division.
One phosphorylated molecule often phosphorylates hundrets more and each of them hundrets more, and so on.
4.) This is what happens when the EGFR gene is muted in lung cancer: the tyrosine kinase switch it encodes becomes permanently locked „on“.
The signalling pathway instructs cells to keep deviding, producing new cells faster than they are eliminated.