Brewsci

Scientific formulae for the Homebrew and Linuxbrew package managers

[Blake Riley @blake_riley]

Big fan of the Gemmi toolkit for #xtallography (@ccp4_mx / GΦL), and its cif & mtz command-line tools.
Now also available via : 💻 `brew tap brewsci/bio; brew install gemmi`
👏 @MacHomebrew & @brew_sci

[Brewsci @brew_sci]

🎉 New formula biointerchange in Brewsci/bio for Linux and macOS!
ℹ️ Genomic linked-data converter: an interchange GFF, GVF, VCF files via JSON-LD
🍺 brew install brewsci/bio/biointerchange
🏡 https://t.co/YedC2jDnMW
🔬 https://t.co/aaJgJTeT2y
#bioinformatics

[Brewsci @brew_sci]

🎉 New formula krona in Brewsci/bio for Linux and macOS!
ℹ️ Interactively explore metagenomes and more from a web browser
🍺 brew install brewsci/bio/krona
🏡 https://t.co/hAQvSmvbmf
📖 https://t.co/m52qHuyvWb
🔬 https://t.co/aaJgJTeT2y
🐧 https://t.co/16Xe6OUz8N #bioinformatics

[Romain Studer @[email protected] @RomainStuder]

Just added PAML 4.9j to Homebrew for macOS. To install it, you will need brewsci/bio: `brew tap brewsci/bio; brew install paml`. And the good news? It will automatically work on Mac ARM M1 architecture! @MacHomebrew @brew_sci

[Brewsci @brew_sci]

🎉 New formula clipper4coot in Brewsci/bio for Linux and macOS!
ℹ️ Crystallographic automation and complex data manipulation libraries
🍺 brew install brewsci/bio/clipper4coot
🏡 https://t.co/gUZZS9v6Kr
🔬 https://t.co/aaJgJTeT2y
🐧 https://t.co/16Xe6OUz8N #bioinformatics

[Brewsci @brew_sci]

🎉 New formula ssm in Brewsci/bio for Linux and macOS!
ℹ️ Secondary-structure matching, tool for fast protein structure alignment
🍺 brew install brewsci/bio/ssm
🏡 https://t.co/iisbBHCUkd
📖 https://t.co/4anWpsOHXF
🔬 https://t.co/aaJgJTeT2y
#bioinformatics

[Brewsci @brew_sci]

🎉 New formula libccp4 in Brewsci/bio for Linux and macOS!
ℹ️ Protein X-ray crystallography toolkit
🍺 brew install brewsci/bio/libccp4
🏡 https://t.co/lVnNyD3XOJ
🔬 https://t.co/aaJgJTeT2y
🐧 https://t.co/16Xe6OUz8N #bioinformatics

[Brewsci @brew_sci]

🎉 New formula mmdb2 in Brewsci/bio for Linux and macOS!
ℹ️ C++ toolkit for working with macromolecular coordinate files
🍺 brew install brewsci/bio/mmdb2
🏡 https://t.co/gUZZS9v6Kr
🔬 https://t.co/aaJgJTeT2y
🐧 https://t.co/16Xe6OUz8N #bioinformatics

[Brewsci @brew_sci]

🎉 New formula raster3d in Brewsci/bio for Linux and macOS!
ℹ️ Set of tools for generating high quality raster images of proteins
🍺 brew install brewsci/bio/raster3d
🏡 https://t.co/thNW0BjzYf
📖 https://t.co/2p1cL7Pate
🔬 https://t.co/aaJgJTeT2y
#bioinformatics

[Brewsci @brew_sci]

🎉 New formula faqcs in Brewsci/bio for Linux and macOS!
ℹ️ Quality Control of Next Generation Sequencing Data
🍺 brew install brewsci/bio/faqcs
🏡 https://t.co/X3M2EJvIlD
📖 https://t.co/0CIebXqabW
🔬 https://t.co/aaJgJTeT2y
🐧 https://t.co/16Xe6OUz8N #bioinformatics

[Brewsci @brew_sci]

🎉 New formula falco in Brewsci/bio for Linux and macOS!
ℹ️ C++ implementation of FastQC for quality control of sequencing data
🍺 brew install brewsci/bio/falco
🏡 https://t.co/WXzv15LR8e
📖 https://t.co/MosWZEzXNY
🔬 https://t.co/aaJgJTeT2y
#bioinformatics

[Brewsci @brew_sci]

🎉 New formula slim in Brewsci/bio for Linux and macOS!
ℹ️ Forward simulator for population genetics and evolutionary biology
🍺 brew install brewsci/bio/slim
🏡 https://t.co/m1csj1a1tc
📖 https://t.co/2kbGv7Q2g7
🔬 https://t.co/aaJgJTeT2y
#bioinformatics

[Brewsci @brew_sci]

🎉 New formula plink2 in Brewsci/bio for Linux and macOS!
ℹ️ Analyze genotype and phenotype data
🍺 brew install brewsci/bio/plink2
🏡 https://t.co/3LtyW5R0yL
📖 https://t.co/29a6Fvfjj4
🔬 https://t.co/aaJgJTeT2y
🐧 https://t.co/16Xe6OUz8N #bioinformatics

[Brewsci @brew_sci]

🎉 New formula jmol in Brewsci/bio for Linux and macOS!
ℹ️ Open-source Java viewer for chemical structures in 3D
🍺 brew install brewsci/bio/jmol
🏡 https://t.co/gYcPXEvHqD
🔬 https://t.co/aaJgJTeT2y
🐧 https://t.co/16Xe6OUz8N #bioinformatics

[Justin Mayer 🐘 @[email protected] @jmayer]

Do you use Homebrew Python? You may not realize this, but Homebrew Python is not meant for you.

My latest article explains why, as well as what I think you should use instead when developing with #Python. 🐍

https://t.co/uDtyZkqBPx

[🍺 Homebrew @MacHomebrew]

Homebrew taps (3rd-party repositories) now support a GitHub Actions-based workflow hosting their bottles (binary packages) on GitHub Releases (rather than Bintray).

This should make it significantly easier to distribute macOS and/or Linux bottles.

https://t.co/MZJ2MNFy6N

[Brewsci @brew_sci]

🎉 New formula tmalign in Brewsci/bio for Linux and macOS!
ℹ️ Protein structure alignment algorithm based on the TM-score
🍺 brew install brewsci/bio/tmalign
🏡 https://t.co/3IC3UGunsZ
📖 https://t.co/yueHNbuMTD
🔬 https://t.co/aaJgJTeT2y

https://t.co/16Xe6OUz8N #bioinformatics

[Brewsci @brew_sci]

🎉 New formula mican in Brewsci/bio for Linux and macOS!
ℹ️ Structure alignment algorithm that can handle Multiple-chain complexes
🍺 brew install brewsci/bio/mican
🏡 https://t.co/C2WlSIHlXw
📖 https://t.co/qOcG4oR4qh
🍻 https://t.co/16Xe6OUz8N #bioinformatics

[Brewsci @brew_sci]

🎉 New formula percolator in Brewsci/bio for Linux and macOS!
ℹ️ Semi-supervised learning for peptide identification from shotgun proteomics data
🍺 brew install brewsci/bio/percolator
🏡 https://t.co/yMVFj7gWvt
📖 https://t.co/3JgyBo7v6d
🍻https://t.co/16Xe6OUz8N #bioinformatics