Busch Lab

We're interested in the relationship between gene activity and phenotypic outcomes after challenges like genetic mutations, chromatin disruption and infection.

[Busch Lab @busch_lab]

Or see Bluesky:

https://t.co/jLChXJKOIK

[Busch Lab @busch_lab]

Someone on Mastodon recently posted about issues they've seen with #zebrafish annotation in recent #Ensembl versions, so we wrote down some of what we've noticed.

The TL;DR version is that we are just using Ensembl 109's annotation, including for enrichment analyses.

[Busch Lab @busch_lab]

For more info, see:

https://t.co/sVYz8G9mwe

[Valeria Di Leo @ValDiLeoMito]

Today is a very exciting day to see this paper finally published in @NatureGenet 💫

Congratulations to Ana Topf and Volker Straub for the hard work and the resilience 👩‍🔬 🔬 👨‍🔬
@jwmdrc @UniofNewcastle @anatopf

Enjoy the reading https://t.co/2HkNJrwBA2

[Vincenzo Torraca @VinTorraca]

It was such a pleasure to give an interview for the First Person series @DMM_Journal!
This is a great space for researchers to highlight their science and plans for the future.
https://t.co/nDleOvkpSZ

[Vincenzo Torraca @VinTorraca]

The final version of our new article is out @DMM_Journal! We analysed the transcriptome of Shigella flexneri infection in zebrafish larvae and discovered Shigella-inducible factors involved in controlling host susceptibility.
https://t.co/xa9WOpUmZu

[Vincenzo Torraca @VinTorraca]

New article out! We analysed the transcriptional signature of Shigella flexneri infection in zebrafish larvae and discovered Shigella-inducible factors involved in controlling host susceptibility.

Thanks to all the co-authors!

https://t.co/xa9WOpUmZu

[EMBL-EBI Training @EBItraining]

Wave if you've enjoyed your week of #bioinformatics training 👋!

Thank you to the participants, trainers, and organisers at 'Introduction to RNA-seq and functional interpretation'. We look forward to seeing what you do next.

Discover more training: https://t.co/9fjmwdrYia

[bioRxiv @biorxivpreprint]

Transcriptional profiling of zebrafish identifies host factors controlling susceptibility to Shigella flexneri https://t.co/saY3J1k5Ol #bioRxiv

[EMBL-EBI Training @EBItraining]

👋 Thank you to all the trainers, organisers, and delegates for joining us for our last on-site course of the year! @e_m_busch, @mirloupa, @aleenamolbio, @Antonia_Nilsson, @iansealy, @richysix, @canicamxli, and many more.

➡️Join us at an event in 2023: https://t.co/u0CRvrpv8o

[Elisabeth Busch @e_m_busch]

Do you have a cool idea for a genetic screen in #zebrafish or are you interested in robustness during development? Get in touch to discuss this #postdoc fellowship call https://t.co/irpNttm8qx @QMUL @QM_SBBS

[Busch Lab @busch_lab]

If you were thinking of registering but haven't had time then we have good news - you've now got until next Friday. Come and join us as we return to the lovely Wellcome Genome Campus for four days of zebrafish bioinformatics and functional genomics.

[EMBL-EBI Training @EBItraining]

For one week only, we've extended the deadline for our #zebrafish course due to popular demand!

🗣️ @busch_lab, @e_m_busch, @BENsembl, @ensembl, @canicamxli, @news4go, @reactome, @ExpressionAtlas

🔗Apply by 8 July: https://t.co/DtsDyQyRM5

[EMBL-EBI Training @EBItraining]

For one week only, we've extended the deadline for our #zebrafish course due to popular demand!

🗣️ @busch_lab, @e_m_busch, @BENsembl, @ensembl, @canicamxli, @news4go, @reactome, @ExpressionAtlas

🔗Apply by 8 July: https://t.co/DtsDyQyRM5

[Busch Lab @busch_lab]

We couldn't be at #IZFC2022 this year, but hope to meet some #zebrafish researchers @emblebi in September. There's a week left to apply.

[EMBL-EBI Training @EBItraining]

One week left to apply for our #bioinformatics and functional #genomics in #zebrafish course that will be held at @emblebi this September. 🦓🐟

🔗 Apply now: https://t.co/DtsDyQyRM5

[Karin Tuschl @KarinTuschl]

Big thanks for the ongoing support from @stevewilsonfish and @The_MRC, and to all our collaborators @fishymusings @leovaldevo @ibianco3 @NeuhaussLab @CorinneHouart @realRihellab!

[Busch Lab @busch_lab]

Come and join us! Please spread the word.

[EMBL-EBI Training @EBItraining]

🦓🐟Applications are open!

Learn how to design functional #genomics experiments, manage and analyse #RNAseq datasets from #zebrafish, and compare results to other species.

🗣️ @e_m_busch, @iansealy, @richysix, @canicamxli & more
🔗 Apply by 1 July: https://t.co/KD1U08Iavy

[Busch Lab @busch_lab]

Please share this open PhD position in our lab: "Investigating the rules of paralogue interactions during embryonic development"

[Elisabeth Busch @e_m_busch]

We have an open PhD position, please share! Closing date 22nd March, do get in touch with any questions. https://t.co/drsmuAFsDL

[Elisabeth Busch @e_m_busch]

Super happy to have this story up @biorxivpreprint with @stevewilsonlab. Allele-specific expression can mess with your mutant #RNAseq, always check genomic location of DE genes! #zebrafish

[bioRxiv @biorxivpreprint]

A red herring in zebrafish genetics: allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants https://t.co/LWgGX7K822 #bioRxiv

[Adele Leggieri @AdeleLeggieri]

Thanks NIDA for the opportunity to present to the 2021 GECCRT meeting! Look for #Leggieri #Mech #Hosseinian & #Merteroglu to access our works https://t.co/4o0XE7QVE2
@Dan10R3r10 @aleksandra_mech @saEdehosseinian @busch_lab