Casper Jamin

Medical Molecular Microbiologist in training & Postdoc @ Maastricht UMC+. Interested in the dissemination of antimicrobial resistance by bacteria and MGEs

[Antoni P.A Hendrickx @ap_hendrickx]

Revolution in genome sequencing is here: Genomic surveillance of multidrug-resistant organisms based on long-read sequencing https://t.co/KYBGQFZDJX

[Casper Jamin @casper_jamin]

@JongAukede Gefeliciteerd! Geniet ervan! Ben je opgelucht?

[Johannes Köster (@johanneskoester.bsky.social) @johanneskoester]

I am happy to finally announce the release of #Snakemake 8.0! In about half a year, we have modernized large parts of the code base. Most importantly, Snakemake 8.0 introduces a versatile plugin system, redesigned support for external storage, and modernized documentation. (1/n)

[Antoni P.A Hendrickx @ap_hendrickx]

We are honoured that Prof. Dr. Alessandra Carattoli will be the opening speaker in the session of @casper_jamin and I at the Scientific Spring Meeting KNVM & NVMM 2024 on 9 & 10 April 2024 entitled: "Towards understanding bacterial plasmids and antibiotic resistance"
#NVMM #KNVM

[Casper Jamin @casper_jamin]

@lskatz @BeldMaaike

[Casper Jamin @casper_jamin]

@DrJohannaRhodes Cheaper and easier (NGS)data generation and data analyses bottlenecks

[conda @condaproject]

📣 The special Conda 23.10.0 release is here. #libmamba is now the default solver in the #conda package and environment manager. 💨💨 https://t.co/0oR1C82yOX

[Casper Jamin @casper_jamin]

@SamuelHorsfield @genomeresearch Nice blogpost! Will try this tool for ~10.000 MRSA isolates

[Antoni P.A Hendrickx @ap_hendrickx]

Our latest work in collaboration with MUMC is available online in Emerging Infectious Diseases, entitled:

"OXA-48–Producing Uropathogenic Escherichia coli Sequence Type 127, the Netherlands, 2015–2022"

https://t.co/SzjnxGroW1

[Casper Jamin @casper_jamin]

@MarionKoopmans Nice, Kroller Moller

[Casper Jamin @casper_jamin]

@historyinmemes @PeacockSpyder next challenge ?

[Casper Jamin @casper_jamin]

@dralhubb Got one already, thanks!

[Casper Jamin @casper_jamin]

@happy_khan What version of conda do you need for this?

[Casper Jamin @casper_jamin]

@madhurarrao Defended 29-3-23, printed 100 copies, have 3 left…

[Casper Jamin @casper_jamin]

@SurroundScience @nanopore @ap_hendrickx

[Staph papers @Staph_papers]

Molecular characterization of MRSA collected during national surveillance between 2008 and 2019 in the Netherlands https://t.co/wXasXTC5hL

[Casper Jamin @casper_jamin]

@kosbak @con_meehan At Maastricht UMC, we are exploring super fast PCR (40cycles 15-30 mins) and Oxford nanopore seq, so we can do same day diagnostics

[Casper Jamin @casper_jamin]

@con_meehan @StefanBoers1