Genomic Digital Labs

AWS Partner Network - Bioinformatics Cloud Infrastructure

[Seqera @SeqeraLabs]

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[Casanova Lab @casanova_lab]

1/ We are excited to report in @Nature the discovery that human inborn errors of the alternative NF-κB pathway-dependent immunity underlie the development of auto-Abs neutralizing type I IFNs (https://t.co/TFUOnBPIFi).

[Genomic Digital Labs @gedilabs]

@abdnahid_ Any particular reason your group uses Collab over managing your own JupyterHub server? Is it the convenience of having google manage hosting, or are there additional features in collab that you leverage?

[Genomic Digital Labs @gedilabs]

For bioinformatics analysis, which is your primary IDE of choice?

[Genomic Digital Labs @gedilabs]

Calling all single-cell data explorers! 🧫👩‍🔬👨‍🔬Do you swear by the pioneering R-based Seurat package, or do you find your rhythm with the newer Scanpy and it’s more diverse Python ecosystem? 👾

Comment on the reasons for your preference! ✏️

[John Didion, PhD (🧬/🦀) @jdidion]

@LUMC_Leiden pytest-wdl is being used by OpenWDL @WDL_dev to automate testing of specification compliance. Take a look and volunteer to write some tests if you want to help improve WDL workflow engines like Cromwell, @cziscience miniwdl, and @dnanexus dxWDL https://t.co/JAlkBo0Gzy

[Nils Homer @nilshomer]

#Bioinformatics on AWS has never been easier!

So long CloudFormation; say hello to the #AWS Genomics CLI. I've used it with snakemake, nextflow, cromwell, and miniwdl. It takes the pain of going from a working workflow locally to one on the cloud: 🧑‍🍳💋.

https://t.co/Ei0fvPfm0q

[Genomic Digital Labs @gedilabs]

Q: Among the aforementioned activities, which would have the highest impact for your team if delivered as a done-with-you service?

[Genomic Digital Labs @gedilabs]

Across the biotechnology industry, research teams lean on bioinformatics expertise and cloud infrastructure to carry out some of the following activities:

[Genomic Digital Labs @gedilabs]

(4) Analytical Framework

Stakeholders decide to ship a knowledge product using insights from their data. To ensure QA of results, engineers develop a system for job tracking, versioning and transforming NGS data to their visualization endpoints.

[Genomic Digital Labs @gedilabs]

@NanouuSymeon Rancher desktop

[Genomic Digital Labs @gedilabs]

CDK Tutorial — Simplify the provisioning of cloud infrastructure to manage, maintain and process your bioinformatics pipelines

https://t.co/eTt1RRFKYR