Top Tweets for #CSGM2018
Trying something new here: @youtube video of my talk from the Coastwide Salmonid Genetics Meeting 2018 (#CSGM2018)
"The value of #chromosomal information for studies in #salmonid #evolution, population #genomics and #transcriptomics"
#scicomm #polyploidy
https://t.co/y1zk1L8GO6
Excellent work from Matthew Hale. Can’t wait to hear more about his investigations on differences among residual tetraploid regions in the salmonid (deviations from the “magic eight”)
#polyploidy #salmonids #CSGM2018 https://t.co/UP1skBYDfM
(from Day2) Wes Larson @Wes_Larson1 finds an #IslandofDivergence in multiple drainages in Sockeye #Salmon in a 400 kb region. Exploring assoc. to #ecotypes. More variation within drainages than between drainages for these regions on LG12a and LG13a (15.1 & 18.2) #CSGM2018
Great work from @DaniBlumstein , haploid #cisco (#Coregonus artedi) genetic map on the way! Goal to facilitate studies on adaptive diversity. Can’t wait to see this map! #CSGM2018 @Wes_Larson1 #SalmonidsAreCool
Lots of discussion on migratory and resident forms of O. mykiss and the Omy05 inversion, containing high LD throughout large region of the chromosome. Including talks from M. Arostegui and S. Weinstein focussing on this chromosome. #CSGM2018
#inversion #popgen
#Omy05 (14.1-8.2)
Have you read about #GREB1L yet? Daniel Prince presents work on genomic basis of premature #migration in steelhead. Conserved region in Chinook as well. Using bait capture to sequence the region. Lots of discussion around this region at #CSGM2018!
https://t.co/nv3IFzmWYp
Terry Beacham - applied side of the EPIC4 @GenomeCanada project, using Parentage-based tagging and Genetic Stock ID.
Many hatcheries rec’d info on where their salmon were caught for first time using tool.
Also able to get exploitation rates, sim to CWT!
@DFO_Science
#CSGM2018
John Candy @DFO_Science is measuring effective population size (Ne) in Chinook #Salmon from Genetic Stock ID data over the years and comparing to escapement. Exciting work! @Wes_Larson1 #popgen @DFO_Pacific #CSGM2018
Kris Christensen is looking deep into the data from the all salmon genomes project, and identifying orthologs across all of the species. Great resources on the way/already here! #CSGM2018
Eric Rondeau from @UVic and @DFO_Pacific gives a great talk on the many ways they are improving the Coho #genome, including reading into and expanding through residually tetraploid regions.
More on the project: https://t.co/ZAuvdApZPr
#CSGM2018
.@mgavery looks at #epigenetic programming diffs in tank or stream-reared steelhead.
High indiv. variation and large family effects must be incl in model.
Finds DMRs, effect in liver > effect in sperm.
Next steps: are the patterns reversible?
#csgm2018 @charrgirl
Maureen Small explains how WDFW uses trans-generational genetic mark-recapture in Chinook Salmon combined with redd count estimates to normalize values and estimate Chinook numbers from the Stillaguamish River #CSGM2018
#groundtruthing #genetics
Ryan Whitmore explains how simulations with #microhaplotypes (avg. 6 alleles per locus) results in less bias in COLONY than standard #SNP simulations.
#csgm2018 #popgen
...and that some simulations can take the supercomputer > 15 months! Yikes!
L. Gilbert-Horvath explains how in California, critically endangered juv. Coho #Salmon from drying streams were collected, raised in hatchery, then released back into the natal stream. They then followed up to see how many reproduced successfully.
#CSGM2018 #conservation
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