Top Tweets for #ChimeraXHowTo
@DavidGilmore3 @SjorsScheres Yes, I used ChimeraX command "surface dust #1 size 3" to hide the disconnected surface specks smaller than 3 Angstroms. Here is undusted versus dusted. #ChimeraXHowTo
Apoferritin at 1.2 Angstroms by cryoEM from the @SjorsScheres lab. Ambient shadow lighting using ChimeraX command "light soft" #ChimeraXHowTo
https://t.co/n3RCy53kOy
Here is how the remdesivir animation was made.
https://t.co/9zj3xeO8fq
#ChimeraXHowTo
@kareem_fr You can display each position of a morph with the coordset command and export it to say an X3D file or GLTF (or OBJ but no color) using the perframe command:
coordset #1 1,21 ; perframe "save model_$1.x3d" frames 21
#ChimeraXHowTo
To depict RNA or DNA as slabs use the command "nucleotides #1 slab". #ChimeraXHowTo
Electron microscopy reveals 388000 neuron synapses (red) in a 0.1 millimeter volume of mouse brain. To color 3D imaging of segmented synapses use command "segmentation color #1 map #2". #ChimeraXHowTo
Neurons in 0.1 millimeter cube of mouse cortex layer 4 from serial block face electron microscopy. To show a surface for each region of a segmentation with integer segment id at each map grid point use command "segmentation surfaces #1". #ChimeraXHowTo
To open 3d light microscopy images where channel, time, and z are in the file name such as cell6_ch1_tm129_z157_190745msec.tif use command "open cell6_ch{c}_tm{t}_z{z}*.tif". #ChimeraXHowTo
To morph between 3 conformations of ATP synthase use ChimeraX commands "open 6n2y 6n2z 6n30" and "morph #1,2,3 wrap true". #ChimeraXHowTo
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