Top Tweets for #LabelTransfer

11 months ago

#LabelTransfer #CellTypeAnnotation popV/popular Vote Automated #CellTypeAnnotation + Measures of Intrinsic & Extrinsic Uncertainty Extrinsic: agreement of 8 prediction algorithms Intrinsic: classifier score of each algorithm RF SVM Celltypist OnClass KNN+Scanorama/BBKNN/scVI/scanVI Confusion matrices b/w consensus predictions & each method +a Google Colab notebook with Tabula Sapiens 20 organs pre-trained models +"scripts to add custom cell type labels to the Cell Ontology before processing by popV" Low consensus score/Low accuracy▶️manual annotation, likely needed for most states of #EndothelialCell & #SmoothMuscleCell 🧐 @nir_yosef1 @NatureGenet 2024 https://t.co/c2kuAo6OBP

Hao Yin

@HaoYin20

11 months ago

#LabelTransfer #CellTypeAnnotation SIMS Scalable, Interpretable Machine learning for Single cell https://t.co/IMUsec2Fj6 TabNet attention-based +Temperature scaling of trained network +Automated gene intersection vs Seurat scANVI scVI Scnym Scibet SingleR scBERT "When applied to cortical organoids, SIMS identified previously misannotated cells in existing atlases" Vanessa Jonsson & Mohammed Mostajo-Radji labs @CellGenomics 2025 https://t.co/fLqHLeCpCF

Top Tweets for #LabelTransfer

Last Seen Hashtags on Sotwe

Trends for you

Most Popular Users