Top Tweets for #SBGridSoftware
New Title Alert: ChemEM- a tool that utilizes information from Cryo-EM density and state-of-the-art small molecule force fields to dock small molecules into protein targets.
Learn more here: https://t.co/x7XIK0YJI3
#SBGrid #SBGridsoftware #structuralbiology
New Title Alert: AMPLIFY- a best-in-class protein Language Model (pLM) that is orders of magnitude less expensive to train and deploy than previous models.
Learn more here: https://t.co/0FVMCfbfmp
#SBGrid #SBGridsoftware #structuralbiology
New Title Alert: pytom-match-pick- a GPU accelerated python module to significantly improve the speed and sensitivity using template matching to detect macromolecules from tomograms.
Learn more here: https://t.co/uP0IlCJ52c
#SBGrid #structualbiology #SBGridsoftware
New Title Alert: pyRMSD- a python package that offers RMSD calculations on large sets of structures, especially large pairwise RMSD matrices through multiple algorithmic implementations.
Learn more here: https://t.co/6oSmp6hEeU
#SBGrid #SBGridsoftware #structuralbiology
New Title Alert: CombFold- a pipeline that predicts the structure of large protein complexes starting from the sequences of chains in the complex, accommodating up to 18,000 amino acids and 32 subunits.
Learn more here: https://t.co/5j5ETkBLxZ
#SBGrid #SBGridsoftware
New Title Alert: relionsparc- a Python Utilities program for converting between Cryosparc and Relion File Formats.
More here: https://t.co/ydhQxb5kIW
#SBGrid #structuralbiology #SBGridsoftware
New Title Alert: PyTME- a software for template matching on tomographic electron microscopy data.
More here: https://t.co/q6uxRHXnAu
#SBGrid #SBGridsoftware #structuralbiology
New Title Alert: Molecular Nodes- a tool that enables quick import and visualisation of structural biology data inside of Blender.
More here: https://t.co/VeKOF7WCs9
#SBGrid #structuralbiology #SBGridsoftware
New Title Alert: AreTomo3- a multi-GPU accelerated software package that enables real-time fully automated reconstruction of cryoET tomograms in parallel with cryoET data collection.
More here: https://t.co/erFpoxsxg0
#SBGrid #structuralbiology #SBGridsoftware
New Title Alert: Foldtree- a snakemake workflow for making and benchmarking structure based trees using Foldseek.
More here: https://t.co/Bg7Obb9mr2
#SBGrid #structuralbiology #SBGridsoftware
New Title Alert: TOMOMAN- a MATLAB package for managing the various preprocessing steps for taking raw data to reconstructed tomograms.
More here: https://t.co/1jAIs1JM96
#SBGridSoftware #SBGrid #structuralbiology
New Title Alert: STOPGAP- a subtomogram averaging workflow written in MATLAB for performing a number of subtomogram averaging tasks including template matching, high-resolution alignment and averaging, & classification.
More here: https://t.co/upvJuyGbYM
#SBGridSoftware #SBGrid
New Title Alert: EM-GAN- a computational tool which enables capturing protein structure information from cryo-EM maps more effectively than raw maps.
More here: https://t.co/gRyGxowP1m
#SBGridSoftware #SBGrid #structuralbiology
New Title Alert: DeepETPicker- a deep learning based open-source software with a friendly user interface to pick 3D particles rapidly and accurately from cryo-electron tomograms.
More here: https://t.co/6XUoxg8Wnc
#SBGridSoftware #SBGrid #structuralbiology
New Title Alert: CTFFIND5- a new version of the cisTEM program CTFFIND with improved CTF estimation for cryoEM.
More here: https://t.co/Hcis819Jcy
#SBGridSoftware #SBGrid #structuralbiology
New Title Alert: ColabDesign- a tool that makes protein design accessible though Jupyter notebooks using AlphaFold, TrRosetta etc.
More here: https://t.co/UzbvPJzlsw
#SBGridSoftware #SBGrid #structuralbiology
New Title Alert: AreTomo3- a multi-GPU accelerated software package that enables real-time fully automated reconstruction of cryoET tomograms in parallel with cryoET data collection.
More here: https://t.co/erFpoxsxg0
#SBGridSoftware #SBGrid #structuralbiology
New Title Alert: LipIDens is a pipeline for simulation-assisted interpretation of lipid or lipid-like densities in e.g. cryo-EM structures of membrane proteins.
More here: https://t.co/cpJJ8Zw1ow
#SBGridsoftware #structuralbiology #SBGrid
New Title Alert: spIsoNet is a tool designed to correct for the preferred orientation problem in cryoEM by self-supervised deep learning, by recovering missing information from well-sampled orientations in Fourier space.
More here: https://t.co/kUvSID9BLw
#SBGridsoftware
New Title Alert: NGLview is a Jupyter/IPython widget to interactively view molecular structures and trajectories in notebooks.
More here: https://t.co/jReQMqb4YK
#SBGridsoftware #structuralbiology #SBGrid
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