Top Tweets for #SeqCode
Taxonomic description of cyanobacteria from extreme habitats through genome-based classification
#microbiology #cyanobacteria #taxonomy #SeqCode
@FrontMicrobiol @seq_code
https://t.co/iSe59yJ207
New #methanogens have arrived!
Meet Methanohalophilus methylutens sp. nov., Methanolobus methylotrophicus sp. nov., and Methanococcoides guerreronegronense sp. nov.
#microbiology #methane #archaea #SeqCode #taxonomy
https://t.co/t0T8UPZDkM
New Research Publication from ARI!
Discovery of a New Drug-Resistant Bacterium from Silkworms Using Modern Genome-Based Naming
Read the full study: https://t.co/e8n6TD11TX.
SeqCode recognizes strains and their value for experimental work. However, type material in #SeqCode consists of genome sequence that unambiguously defines a species. The request suggests using strains as paratypes of genomic type material. One of the suggested paratypes, the type strain Es2 of Methanimicrococcus stummii, is shown in the photos 🤓
#microbiology #taxonomy #systematics #methanogens #archaea
@ISME_microbes @ISMEComms @ISMEJournal @FEMSmicro @MicrobioSoc
https://t.co/yCFx9vpiO5
Taxonomic and metabolic diversity of microbial communities in a thermal water stream in Uzbekistan and proposal of two new classes of uncultivated bacteria, Desulfocorpusculia class. nov. and Tepidihabitantia class. nov.
#microbiology #bacteria #SeqCode
https://t.co/aTap6JGfKA
Proposal of Patescibacterium as the type genus of the phylum Patescibacteriota with Patescibacterium danicum as the type species under #SeqCode
#microbiology #taxonomy
@ISMEComms @ISME_microbes @seq_code
https://t.co/lkY6WrqlOu
Cheers to a great kick off for #ISME19 in #capetown.
Excited for the plenary tomorrow morning followed by poster sessions, talks, and afternoon round tables. Hard to choose between the #seqcode RT and the #darkoxygen RT.
Where will you be?
#sciencetwitter #presspass #isme
Two different names proposed for Asgard archaea phylum, Promethearchaeota (#ICNP) and Asgardarchaeota (#SeqCode). It shows how different rules govern prokaryotic #taxonomy.
#archaea #eukaryotes #microbiology
https://t.co/wwDORZAkfQ
https://t.co/nAAQcJqiru
The type species Asgardarchaeum abyssi is the anchor for the phylum Asgardarchaeota, which are the closest relatives of #eukaryotes. Since no pure culture is available now, the species and thus the phylum are described under the #SeqCode initiative.
https://t.co/foxFcMCWYt
With this, we built a custom db AND improved taxonomic resolution within comm profiles. Some of them were #unnamed and #novel lineages, some of which we proposed new names with @m_chuvochina and submitted to #SeqCode!
Further , we separated them into brackish/marine ecotypes!
Screening 54 water samples (short & long read #ONT sequencing) across brackish to marine sites, @aprabhu90
- recovered nearly 2,500 genomes
- proposed new taxon names (#SeqCode)
- created a custom DB for genome-based community profiling (with improved taxonomic resolution!)
A collaborative effort to preserve nomenclatural & taxonomic congruence:
"Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum #Asgardarchaeota in accordance with the #SeqCode" led by @DanielTamarit & @Ettema_lab
Presenting our taxonomic reclassification of the genus Methanobrevibacter into 8+1 genera based on phylogenomics data at #vaam. It's already done based on #seqcode, but now we are aiming to validly publish our genera under ICNP rules.
#microbiology #taxonomy #vaam2024
Microbe of the Year 2024 at #vaam conference is Ca. Electronema sp. Discovery based on "failed" experiment showed how bacteria transfer electrons via cm long filaments in sediments 🤓. The species described with #seqcode based on genome.
#microbiology #vaam2024
Big thanks to #SeqCode curators @m_chuvochina, @_lrr_ , and @marike_palmer for all the hard work they did! SeqCode demonstrates why species descriptions based on axenic cultures have become obsolete.
Read more
https://t.co/zdf9kdgBC6
https://t.co/KhbRsoXxKW
Even if you have an isolate, it is not always possible to validly publish it as a new species, as national regulations might prohibit free access to the cultures. #SeqCode provides a solution by assigning species names without requiring culture deposition.
https://t.co/jZUJUQgf5r
The developmpent of #seqcode requires participation. Archaea and bacteria cannot name themselves 😄
#taxonomy #microbiology #nomenclature
https://t.co/YpXhmcj9I5
A major hurdle to publishing a new prokaryotic #species is a fact that one need to deposit its culture to two collections. #seqcode is a way to overcome the problem using genome sequence as a type material and not the culture.
#microbiology #taxonomy
https://t.co/2Y9oUDrNHi
Ideally, you also validate taxonomic names under the #SeqCode
- using the SeqCode Registry, a registration web portal through which names and nomenclatural types are registered, validated and linked to metadata. More info: https://t.co/8Z1uWoa3B0
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