Top Tweets for #Tissuumaps
We @biif_sweden had great fun teaming up with Frederic Ballllosera Navarro from Emma Lundberg's lab for an #i2k workshop! We discussed tools and approaches for #multiplex image data, and showed #PIPEX #TissUUmaps #spatialdata!
Much enjoyed the high-content presentation by Beth Cimini, giving good motivation for Web Apps, e.g. #piximi, for Image Processing (and, @CBA_UU, #CytoBrowser and #TissUUmaps )
I see some interest in this older announcement of our #TissUUmaps webinar - the webinar has already passed, but you can find the recording on our YouTube channel! https://t.co/1KPrBXRI3X
We are holding a #TissUUmaps webinar next Tuesday, 10:00 am CET.
#TissUUmaps is a tool for GPU-accelerated interactive quality assessment and #visualization of large-scale #SpatialOmics and digital pathology data.
Register here: https://t.co/XzjzaSw3jj
Thanks for organizing the OsSL and for the questions and comments on #TissUUmaps! Read the docs, tutorials and download from https://t.co/Mnrrhpv7o0
There is a very effective way to help the #bioimageanalysis community:
organize an #OpenSource #Software lounge (OsSL)
to connect researchers with developers
like #NEUBIAS does!
(Porto, 2023)
@NEUBIAS_ @EoscLife Thank you Maria Azevedo @ALM_i3S and Florian Levet @f_levet !
We are holding a #TissUUmaps webinar next Tuesday, 10:00 am CET.
#TissUUmaps is a tool for GPU-accelerated interactive quality assessment and #visualization of large-scale #SpatialOmics and digital pathology data.
Register here: https://t.co/XzjzaSw3jj
We are holding a #TissUUmaps webinar next Tuesday, 10:00 am CET.
#TissUUmaps is a tool for GPU-accelerated interactive quality assessment and #visualization of large-scale #SpatialOmics and digital pathology data.
Register here: https://t.co/XzjzaSw3jj
TissUUmaps 3.1 is here! π₯³ Try it out, take a tour, join our webinar ! #bioimageanalysis #TissUUmaps
Webinar: https://t.co/XzjzaSw3jj
Exciting news! TissUUmaps 3.1 is now available! π
1/9 - In this thread, I highlight some of the main new features: AnnData / HDF5 support, side by side display, network visualization, and many more!
Download now: https://t.co/6et9W1UP0H #TissUUmaps #SpatialOmics #Visualization
Exciting news! TissUUmaps 3.1 is now available! π
1/9 - In this thread, I highlight some of the main new features: AnnData / HDF5 support, side by side display, network visualization, and many more!
Download now: https://t.co/6et9W1UP0H #TissUUmaps #SpatialOmics #Visualization
These are some of our finding, but there is more biology in our data. For exploring our data, we put together a #Tissuumaps viewer with all the data. It's fast, interactive and easy to use. 9/N
https://t.co/8BksvBc2OR
Look at one of @CarolinaWahlby's projects giving fruits. #TissUUmaps is today a big project, you can visualize and analyze any kind of spatial data. These two have done a great job making it faster with #WebGL and more accessible. Look at these :D faces! https://t.co/kGCYBipcc6
Ever wondered if your #MERFISH #FISH or #insituseq was well decoded? How can you trust the quality of the gene expression? With this nice #TissUUmaps plugin where you can select individual spots and check their corresponding bases.
Just uploaded a tutorial on how to use the TissUUmaps spot detector plugin for quality control on starfish #InSituTranscriptomics decoding experiments directly in JupyterNotebook! β
Find the full video and the implementation in: https://t.co/NmbhKQPEUa
#TissUUmaps can display large-scale spatial omics, but not only!!π
Here: an interactive version of #LePen vs #Macron results at the town level: https://t.co/7Mqz2f6b6Z
I'm very happy to see how much #TissUUmaps has advanced. If you need to visualize #spatial #transcriptomics data, analyze and check its #UMAP (or any other) representation this is your viewer. https://t.co/d9FGAKXg5N check it and share please! π¦ π©βπ»π€―
Super happy for #TissUUmaps 3.0! For visualization of whole slide images with all the data associated to them. In-situ sequencing, cell types, regions, and anything you can compute from your tissue and cells. https://t.co/sIWMvzXXkJ
At Uppsala we love @CarolinaWahlby. Can't have enough of her. This is our #TissUUmaps showing what seems like ordinary markers on the tissue. This fantastic shader programming was done by the talented Fredrik NysjΓΆ, the newest addition to the @biif_sweden. https://t.co/qUeI9oMHj3
A researcher asked me for help about #TissUUmaps we met on zoom and I wish I could show you the happiness in her beautiful face when we solved an issue and she could see millions of #geneExpression points in her tissue sample. She doesn't know it, but she made me very happy π
Our #TissUUmaps applications note is out! and it's Open access! We thank @OUPBioinfo for a friendly process, the reviewers for their kind comments and constructive criticism, @UppsalaUniLib for the OA agreements and @ERC_Research for the funding. @CarolinaWahlby @GabrielePartel
I am making and editing the video on the advanced usage of our tool #TissUUmaps. So advanced that I can see the matrix!! π
Checkout the videos that already exist now at https://t.co/W3F7tAuQch
ps: Made with π€ and with Blender #b3d. Wish me luck with the paper submission
Carolina Wahlby taking about her work at @UU_University on #TissUUmaps #DeepLearning. Also making the good point that image analysis is like playing #WheresWally!
#NEUBIAS2019 #NEUBIAS @NEUBIAS_COST
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