#annotationhub - Twitter Hashtag

Johannes Rainer also @[email protected] @jo_rainer

over 3 years ago

#MassBank release 2022.12.1 is now available in @Bioconductor's #AnnotationHub ! Very easy and reproducible way to load it into #rstats and integrate into #Spectra and #MetaboAnnotation-based #Metabolomics annotation workflows 😊

jo_rainer's tweet photo. #MassBank release 2022.12.1 is now available in @Bioconductor's #AnnotationHub !

Very easy and reproducible way to load it into #rstats and integrate into #Spectra and #MetaboAnnotation-based #Metabolomics annotation workflows 😊 https://t.co/nOX8G6mASx

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Johannes Rainer also @[email protected] @jo_rainer

over 3 years ago

@J_my_sci @wittingmichael1 Easiest is to get MassBank data from @Bioconductor's #AnnotationHub : You can then use the "cdb" variable below with #MetaboAnnotation

jo_rainer's tweet photo. @J_my_sci @wittingmichael1 Easiest is to get MassBank data from @Bioconductor's #AnnotationHub :

You can then use the "cdb" variable below with #MetaboAnnotation https://t.co/zCzPgaitIO

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Johannes Rainer also @[email protected] @jo_rainer

almost 5 years ago

#ensembldb EnsDb databases with gene/transcript/protein annotations for all 243 species from @ensembl are now available in @Bioconductor's #AnnotationHub. These include now also information whether transcripts are canonical (thanks @manogenome for suggesting)

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Sangram K Sahu

@sangram_ksahu

over 6 years ago

It takes full advantage of #AnnotationHub package to get annotation for the selected organism and do enrichment analysis on top of it using #clusterProfiler. AnnotationHub package makes sure you always get the lastest annotation from public databases. 2/3

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Johannes Rainer also @[email protected] @jo_rainer

over 7 years ago

just added (with help from @lshep712) #ensembldb #EnsDb databases for all 169 species from @ensembl release 97 to @Bioconductor's #AnnotationHub 🎉

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