Top Tweets for #cytomapper
The newest version (3.18) of @Bioconductor #Rstats has been released including updates and minor bug fixes to #cytoviewer, #imcRtools, #cytomapper. Make sure to update your versions to use the newest release https://t.co/yc4qxCQK5y
@lassedochreden presenting a workshop on the #cytoviewer and #cytomapper packages for visualizing multiplexed imaging data with support of @NilsEling at this years @Bioconductor conference #EuroBioC2023
Checkout the packages at https://t.co/66sS6nS58h & https://t.co/AcSdBabIjy!
Wednesday and Thursday, @JonasWindhager and I prepared a computational workshop covering #image visualization using @napari_imaging, image processing via #steinbock, #singlecell and #spatial data analysis using #imcRtools and #cytomapper. (4/6)
First day of our computational workshop on #highlymultiplexedimaging lead by @JonasWindhager and @NilsEling was a full success!
Topics:
- image #visualization with @napari_imaging
- image processing with #steinbock
- data processing in #Rstats with #imcRtools & #cytomapper
{simpleSeg} for cell segmentation in #RStats compatible with #cytomapper and {Statial} for detecting cell type co-localisation while accounting for tissue structure. Both built by @TheEllisPatrick and team.
The #cytomapper package developed by @NilsEling, @tebiwankenebi and Nicolas Damond allows the visualization of multichannel image composites and maps single-cell information to segmentation masks. Check it out at: https://t.co/o8CzTxwlxN
The newest versions of #cytomapper and #imcRtools are now released on @Bioconductor. These #RStats packages support #spatial #singlecell and #multiplexed #imaging analysis. See the newest features below 👇
For segmentation quality control, the #cytomapper R/Bioconductor package allows outlining cells on composite images. https://t.co/trFSdln4En
Version 1.6 of the #cytomapper package has now been released. It now offers accessing images from .h5 files without the need to reading them into memory (https://t.co/9QA5zb46Zs). Check it out at: https://t.co/9dGXJWGga5
I'll be demoing the #cytomapper @Bioconductor package at #Bioc2021 on Friday. It highlights the visualisation of #multiplexed #imaging data in #Rstats. Registration is still open: https://t.co/CyCSqI3joK. The workshop material is available online: https://t.co/O8Gwfi4gwe
Interested in new developments within the @Bioconductor data analysis framework? Sign up to #Bioc2021! Lots of great talks and workshops. I'll be demonstrating the #cytomapper package for highly multiplexed image visualization in #Rstats.
This has been fun! Totally worth waking up in the middle of the night to chat about #imagingmasscytometry and #cytomapper. Thanks for the invite, @TheEllisPatrick!
Very impressive talk at @CPC_usyd (virtually) on #imagingmasscytometry analysis using CytoMapper (https://t.co/WXrxHuyPP9) by @NilsEling. Thanks @TheEllisPatrick for organising!
Our new data package #imcdatasets has been released in @Bioconductor 3.13. Get immediate access to curated #ImagingMassCytometry datasets, already formatted for easy integration in your data analysis pipelines and #cytomapper visualization. Try it out: https://t.co/JNY4826qqD
Version 1.4 of the #cytomapper @Bioconductor package for visualisation of highly multiplexed images and single-cell data has now been released! New features below 👇
The #cytomapper @Bioconductor package now supports images stored on disk. This makes the visualization of #multiplexedimaging data easily scalable to hundreds of images in parallel. Check out the new vignette here: https://t.co/PrszRcJyFn.
Just tried #cytomapper. Very useful and compatible with my existing #imagingmasscytometry data analysis workflow. Recommended!
Check out the preprint here: https://t.co/RiO32WnyE5
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