Top Tweets for #hitseq2022
#HiTSeq2022 comes to a close - best talk award goes to Rachael Aubin for her talk “ConDecon: a clustering-independent method for estimating single-cell abundance in bulk tissues using reference single-cell RNA-seq data” - congrats!
#HiTSeq2022 next talk: “Markov chains improve the significance computation of overlapping genome annotations” by Askar Gafurov #ISMB2022
I am sorry to hear my presentation at #HiTSeq2022 #ISMB2022 was cut off due to some technical issues. All I got was an e-mail asking for the pre-recorded talk I've uploaded two weeks ago.
Video: https://t.co/Wp2dPNQZ5a
Slides: https://t.co/rHdcwNW3V2
JA #HiTSeq2022 #ISMB2022 : *anecdote from questions: Part of this problem was already solved by mathematician literature... but they didn't tell anyone about it (presumbly in comp-bio space) 🤣
Final talk of this #HiTSeq2022 #ISMB2022 afternoon session is Jarno Alanko with "Matchtigs: minimum plain text representation of kmer sets".
GP #HiTSeq2022 #ISMB2022 : Introducing term "super-k-mers" - maximal sequence of consecutive k-mers with the same minimizer; there are far fewer super-k-mers than k-mers; a super-k-mer is space-efficient with respect to constituent sub k-mers
GP #HiTSeq2022 #ISMB2022 : Background - software tools based on k-mers are prevalent in bioinformatics; focused on k-mer dictionary problem, i.e. ability to build an efficient dictionary with lookup and access operations (amongst others)
PT #HiTSeq2022 #ISMB2022 : Accuracy is measured via bias and consistency metrics; found evidence of bias in mashmap (a minimizer Jaccard estimator); currently presenting two theorems at high-level that show that the minimizer Jaccard estimator is biased
Kicking off the #HiTSeq2022 #ISMB2022 afternoon session is Paul Medvedev with "The minimizer Jaccard estimator is biased and inconsistent".
#HiTSeq2022 continues today at #ISMB2022 with a keynote form @BenedictPaten titled “A Draft Human Pangenome Reference” - join us at 10:30 CT, Madison B
JU #HiTSeq2022 #ISMB2022 : For more info on ReadBouncer:
Pre-print: https://t.co/yTQwnxOrtV
Repo: https://t.co/mJJWfIU4Vz
JU #HiTSeq2022 #ISMB2022 : ReadBouncer performs live base calling and read classification based on k-mer sets. This tool is CPU-enabled and allows for large references. K-mer sets are compared to infer biological relatedness quickly.
Deadline for abstract submissions for HiTSeq #ISMB2022 to be considered for a talk ends tomorrow. Please submit your work on NGS algorithms - see details: https://t.co/WfM9AplVu3
Thats all, folks, #hitseq2021 is over! Brought to you by @calkan_cs, @BirteKehr, @anaconesa, @ribozyme, #KjongLehmann, and #DirkEvers. See you, (once again, hopefully in person) next year for #hitseq2022! #ismbeccb2021
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