Top Tweets for #pixelseq
Benchmarking sequencing-based #SpatialTranscriptomics methods
#10xVisium
#HDST
#BMKMANUS1000
#SlideseqV2
#Stereoseq
#PIXELseq
#DBiTseq
🐭adult brain/adult olfactory bulb/e12.5 embryo
1⃣Molecular capture efficiency
2⃣Molecular lateral diffusion
Spatial accuracy of mRNA detection, dictated by tissue & permeabilization
3⃣Clustering + Cell state annotation
🧐Different ST methods yield inconsistent cell-cell communication results by #CellChat v1.6 or #CellPhoneDB v4
bioRxiv 2023
https://t.co/khKH10T1Hi
🚨PREPRINT ALERT🚨
Systematic comparison of sequencing-based spatial transcriptomic methods🫶
#ST #benchmark #Visium #HDST #BMKMANUS1000 #SlideSeq #StereoSeq #PIXELSeq #DBiTseq
👉https://t.co/6iQQVJltDU
Continuous Polony Gels for Tissue Mapping with High Resolution and RNA Capture Efficiency https://t.co/JAmkM7uCUt / Added #PIXELSeq to https://t.co/sdLqMFDgGR
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