Top Tweets for #seqfu
A new #SeqFu release directly from the Gambia!
Bugfix, slight improvement to fu-orf (1.20.1)
And moved the building stack to nim 2.0
Unfortunately, bioconda recipe won't work on macOS for the latest version... you can get up to 1.20 on mac until this gets fixed
Also this year, we had the opportunity to share some #SeqFu stickers at #EBAME8 with @EvelienAdri, @HannahVPye and @telatin.
Every single sticker is honoured...
Article by Andrea Telatin, Piero Fariselli and Giovanni Birolo. "SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files". Free Reading: https://t.co/OmMF9nMF3n
Welcome to read and download!
#SeqFu
#Bioinformatics
Very interesting chat with @telatin about his newly developed toolkit #seqfu. #ScienceSoundbites #AudioPaperSeries https://t.co/NWK6IGFmUx
🆕 In today's Science Soundbites @yaasircheema chats to @telatin about the #bioinformatics tool SeqFu which has a suite of utilities to manipulate sequence files 🧬
🔊 Youtube https://t.co/ctvwwC6jYe
🔊 SoundCloud https://t.co/7ZQfm9mYYs
We started tweeting one year ago, trying to share tips and updates about #SeqFu, but also other bioinformatics utilities...
Got our first 200 followers, and 🌟70 🌟 stars!
Wanna retweet to share the love?
#Bioinformatics #tips #celebrations
Is this picture more #varporware or #synthwave?
And what about #SeqFu itself 🤔
Check it out at https://t.co/zTvXYBkVV2
Picture by Dall·E - #bioinfoArt
If you use VirFinder in your #phage pipeline, why not give a go at parallel-virfinder, a wrapper made using #SeqFu 💡?
It's available from bioconda, as easy as:
conda install -c bioconda "parallel-virfinder>=0.3.1"
(digital #sciart by DALLE2 for this #bioinformatics tip)
If you are surrounded by a Jungle of #FASTQ files,
let #SeqFu be at your side 🤠.
Check it out at https://t.co/zTvXYBkVV2
Picture by Dall·E - #bioinfoArt
Have a great week with #SeqFu!
Hope you'll tame all the #FASTQ files sitting on your desk 😃
Picture by Dall·E - #bioinfoArt
#SeqFu view can be used to have a quick inspection of FASTQ files and can be used to highlight expected motifs like adapters or primers allowing partial matches, mismatches and reverse-strand matches, unlike grep 🤔.
It’s Friday pals!
Wishing every #bioinformatician and #coder a nice weekend, ignoring GitHub issues and broken #CI :D
#SeqFu #DancingSequences #FridayVibes
#SeqFu is tested at each update with a suite of functional tests, aiming at ensuring consistency of results across different versions and preventing some bugs 🐛
#Development #Coding #CI
New #SeqFu release 1.12 with improved extraction of Illumina dataset info, to celebrate our Canadian stay at the #csm_scm2022
https://t.co/HvyPPXiZTe
We are in Canada 🇨🇦 at the #csm_scm2022!
#SeqFu is featured in the #MetaPhage poster describing a reads to report #metaviromics pipeline: https://t.co/XENPl9V2Qx
An Illumina run has been demultiplexed with the wrong sample sheet?
With "fu-index" it's easy to extract the index sequence from the files, checking the first N reads... Ships with #SeqFu
📘 https://t.co/UJQ0aFtcor
#Bioinformatics #EasyTip #CommandLIne
#SeqFu ships an ORF extraction (fu-orf) tool supporting paired-end reads and all the NCBI genetic codes
📘Docs https://t.co/0l17nlkbYD
#Bioinformatics #EasyTip
#SeqFu derep is a USEARCH compatible dereplication tool, which can also dereplicate dereplicated files, summing the "size" labels, and supporting GZipped input
📘Docs https://t.co/QPgkKnm01C
#Bioinformatics #EasyTip #metabarcoding
#SeqFu view to peek into FASTQ files, highlighting adapters in both strands, and allowing mismatches or partial matches! ����Pipe it to less:
seqfu view seq.fq | less -SR
📘Docs https://t.co/hb4KDj2I7t
#Bioinformatics #EasyTip #commandLine
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